miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20711 5' -62.9 NC_004688.1 + 45449 0.66 0.544377
Target:  5'- -aGCCCCGUagaGCG--GGGCuucgcaGGUGGCCc -3'
miRNA:   3'- cgCGGGGCG---CGUuuUCCG------CCGCCGGc -5'
20711 5' -62.9 NC_004688.1 + 91205 0.66 0.544377
Target:  5'- cGgGCCCCGgugcCGCAGAuGGCGGCacgacuGGUa- -3'
miRNA:   3'- -CgCGGGGC----GCGUUUuCCGCCG------CCGgc -5'
20711 5' -62.9 NC_004688.1 + 108909 0.66 0.544377
Target:  5'- aUGCCCCG-GCcAGA-GCcGCGGCCGu -3'
miRNA:   3'- cGCGGGGCgCGuUUUcCGcCGCCGGC- -5'
20711 5' -62.9 NC_004688.1 + 17634 0.66 0.54147
Target:  5'- uGCGCCCgugggcaccgaccuCG-GCGAAGGGCucGGCGGgCu -3'
miRNA:   3'- -CGCGGG--------------GCgCGUUUUCCG--CCGCCgGc -5'
20711 5' -62.9 NC_004688.1 + 79210 0.66 0.534708
Target:  5'- ----gCCGCGCA--GGGCGGacagcuCGGCCGa -3'
miRNA:   3'- cgcggGGCGCGUuuUCCGCC------GCCGGC- -5'
20711 5' -62.9 NC_004688.1 + 93256 0.66 0.534708
Target:  5'- uCG-UCgGCGCGAucGGC-GCGGCCGg -3'
miRNA:   3'- cGCgGGgCGCGUUuuCCGcCGCCGGC- -5'
20711 5' -62.9 NC_004688.1 + 94178 0.66 0.525102
Target:  5'- aGCGCaCUGCGguAGGGuuggggcaucGCGGCgGGCCa -3'
miRNA:   3'- -CGCGgGGCGCguUUUC----------CGCCG-CCGGc -5'
20711 5' -62.9 NC_004688.1 + 109990 0.66 0.525102
Target:  5'- cGCGCUgacgguugcacgCCGCGUGGAgcAGGCGGUguGGCa- -3'
miRNA:   3'- -CGCGG------------GGCGCGUUU--UCCGCCG--CCGgc -5'
20711 5' -62.9 NC_004688.1 + 46968 0.66 0.524145
Target:  5'- cGUGCCguaacaaggccgaCCGCGguGAAuGCGGUGGCa- -3'
miRNA:   3'- -CGCGG-------------GGCGCguUUUcCGCCGCCGgc -5'
20711 5' -62.9 NC_004688.1 + 93179 0.66 0.515561
Target:  5'- cGCGCUCCacggguuccgGCGCGGGccGCuuGGCgGGCCGa -3'
miRNA:   3'- -CGCGGGG----------CGCGUUUucCG--CCG-CCGGC- -5'
20711 5' -62.9 NC_004688.1 + 74253 0.66 0.515561
Target:  5'- -aGUaCCGaCGCucc-GGCGGUGGCCGu -3'
miRNA:   3'- cgCGgGGC-GCGuuuuCCGCCGCCGGC- -5'
20711 5' -62.9 NC_004688.1 + 67542 0.66 0.512712
Target:  5'- cGCGCUcgUCGCGCAuucuuGgugaugcgccugcaAAGGCGGCacacccGGCCGc -3'
miRNA:   3'- -CGCGG--GGCGCGU-----U--------------UUCCGCCG------CCGGC- -5'
20711 5' -62.9 NC_004688.1 + 52359 0.66 0.50987
Target:  5'- gGUGCCCUGCGCcgcAGGUuuucuGGCccagcucggccagauGGCCGc -3'
miRNA:   3'- -CGCGGGGCGCGuuuUCCG-----CCG---------------CCGGC- -5'
20711 5' -62.9 NC_004688.1 + 92983 0.66 0.506091
Target:  5'- -aGCUCUacgaGCGCGAGacAGuGCGGCGGCg- -3'
miRNA:   3'- cgCGGGG----CGCGUUU--UC-CGCCGCCGgc -5'
20711 5' -62.9 NC_004688.1 + 108315 0.66 0.506091
Target:  5'- cCGCacaaacaCCGUGaCGGu-GGCGGUGGCCa -3'
miRNA:   3'- cGCGg------GGCGC-GUUuuCCGCCGCCGGc -5'
20711 5' -62.9 NC_004688.1 + 79827 0.66 0.506091
Target:  5'- gGUGCCCC-CGCc-GAGGCuGGCGagguuGCCa -3'
miRNA:   3'- -CGCGGGGcGCGuuUUCCG-CCGC-----CGGc -5'
20711 5' -62.9 NC_004688.1 + 54952 0.66 0.506091
Target:  5'- gGCGCUgCCGaGCAuGAGGuuGCaGGCCGg -3'
miRNA:   3'- -CGCGG-GGCgCGUuUUCCgcCG-CCGGC- -5'
20711 5' -62.9 NC_004688.1 + 82678 0.66 0.506091
Target:  5'- -aGCCgCUGCGCAuGAcGGUguacuGGCGGUCGu -3'
miRNA:   3'- cgCGG-GGCGCGUuUU-CCG-----CCGCCGGC- -5'
20711 5' -62.9 NC_004688.1 + 49193 0.66 0.496697
Target:  5'- -aGgCCUGCGCGccaccgauaacGAAGGCGaG-GGCCGg -3'
miRNA:   3'- cgCgGGGCGCGU-----------UUUCCGC-CgCCGGC- -5'
20711 5' -62.9 NC_004688.1 + 94654 0.67 0.487381
Target:  5'- cGCGCUCaacgauGUGCGucgagcuGGCGGCggGGCCGu -3'
miRNA:   3'- -CGCGGGg-----CGCGUuuu----CCGCCG--CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.