Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20712 | 5' | -57.8 | NC_004688.1 | + | 30773 | 0.66 | 0.764039 |
Target: 5'- cGGCCAGCGcaugGCCauAGGG--GCAUUCGg- -3' miRNA: 3'- -CCGGUCGU----UGG--UCCCagCGUAGGCaa -5' |
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20712 | 5' | -57.8 | NC_004688.1 | + | 105637 | 0.66 | 0.754323 |
Target: 5'- aGCCAGUAGCCGagcagguacGGGUCGaccggaagGUCCGc- -3' miRNA: 3'- cCGGUCGUUGGU---------CCCAGCg-------UAGGCaa -5' |
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20712 | 5' | -57.8 | NC_004688.1 | + | 56571 | 0.67 | 0.683731 |
Target: 5'- uGCCcgcGGCGGCCGGGGaacaccaggGCGUCCGg- -3' miRNA: 3'- cCGG---UCGUUGGUCCCag-------CGUAGGCaa -5' |
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20712 | 5' | -57.8 | NC_004688.1 | + | 81149 | 0.67 | 0.652621 |
Target: 5'- cGCCAGCAGC--GGGUCGUugcCCGg- -3' miRNA: 3'- cCGGUCGUUGguCCCAGCGua-GGCaa -5' |
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20712 | 5' | -57.8 | NC_004688.1 | + | 21062 | 0.68 | 0.610943 |
Target: 5'- cGCCAGCGAugUCGGGGcCGCGccagCCGg- -3' miRNA: 3'- cCGGUCGUU--GGUCCCaGCGUa---GGCaa -5' |
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20712 | 5' | -57.8 | NC_004688.1 | + | 63913 | 0.68 | 0.600544 |
Target: 5'- uGGCCAGCAagaccgACCAGcucGG-CGCcAUCCGg- -3' miRNA: 3'- -CCGGUCGU------UGGUC---CCaGCG-UAGGCaa -5' |
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20712 | 5' | -57.8 | NC_004688.1 | + | 85395 | 0.7 | 0.52883 |
Target: 5'- aGGCCAGUuggugacgaacACCGGGGUUGCccCCGa- -3' miRNA: 3'- -CCGGUCGu----------UGGUCCCAGCGuaGGCaa -5' |
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20712 | 5' | -57.8 | NC_004688.1 | + | 85262 | 0.7 | 0.518819 |
Target: 5'- uGGCCuGCGGagauCCGGGGUUGCcgaAUCCGc- -3' miRNA: 3'- -CCGGuCGUU----GGUCCCAGCG---UAGGCaa -5' |
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20712 | 5' | -57.8 | NC_004688.1 | + | 20982 | 0.7 | 0.518819 |
Target: 5'- cGGCUcGCcgccuGGCCGGGGUCcGCuUCCGUg -3' miRNA: 3'- -CCGGuCG-----UUGGUCCCAG-CGuAGGCAa -5' |
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20712 | 5' | -57.8 | NC_004688.1 | + | 69392 | 0.7 | 0.518819 |
Target: 5'- cGGaCUGGCGACCuGGGUUGUAccggCCGUg -3' miRNA: 3'- -CC-GGUCGUUGGuCCCAGCGUa---GGCAa -5' |
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20712 | 5' | -57.8 | NC_004688.1 | + | 55068 | 0.71 | 0.451127 |
Target: 5'- cGGCUAGCGGcgcucgacacCCGGGGUuggCGCAUCgGUg -3' miRNA: 3'- -CCGGUCGUU----------GGUCCCA---GCGUAGgCAa -5' |
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20712 | 5' | -57.8 | NC_004688.1 | + | 56401 | 0.72 | 0.405857 |
Target: 5'- uGGCCAGCGaggcgcagguguGCCGGaGGUCGUgcggggugAUCCGg- -3' miRNA: 3'- -CCGGUCGU------------UGGUC-CCAGCG--------UAGGCaa -5' |
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20712 | 5' | -57.8 | NC_004688.1 | + | 107081 | 0.72 | 0.397151 |
Target: 5'- aGGCCacGGCAugGCCAGGGUuucUGCGacccuUCCGUUg -3' miRNA: 3'- -CCGG--UCGU--UGGUCCCA---GCGU-----AGGCAA- -5' |
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20712 | 5' | -57.8 | NC_004688.1 | + | 68861 | 0.73 | 0.339678 |
Target: 5'- cGGCCugGGCGG-CGGGGUCGCcgGUCCGg- -3' miRNA: 3'- -CCGG--UCGUUgGUCCCAGCG--UAGGCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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