miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20714 3' -52.6 NC_004688.1 + 98760 0.66 0.947143
Target:  5'- cGCGcCGGCGGAuGACGGUGgCuucgcGGGUu -3'
miRNA:   3'- aUGCaGUUGCUU-CUGCCACgGu----UCCA- -5'
20714 3' -52.6 NC_004688.1 + 80100 0.66 0.947143
Target:  5'- gGCGUCAGaacAAGAuaggccacccCGGUGUCGGGGUu -3'
miRNA:   3'- aUGCAGUUgc-UUCU----------GCCACGGUUCCA- -5'
20714 3' -52.6 NC_004688.1 + 52874 0.66 0.937532
Target:  5'- cGCGUUAACGAguAGuACGGgcgGCgGGGGc -3'
miRNA:   3'- aUGCAGUUGCU--UC-UGCCa--CGgUUCCa -5'
20714 3' -52.6 NC_004688.1 + 107380 0.66 0.937532
Target:  5'- --gGUCGGCGGcuugcuGAUGGUGCCAgccgAGGc -3'
miRNA:   3'- augCAGUUGCUu-----CUGCCACGGU----UCCa -5'
20714 3' -52.6 NC_004688.1 + 31026 0.66 0.937532
Target:  5'- -cCGUCGGCcGAGugGGc-CCAAGGUg -3'
miRNA:   3'- auGCAGUUGcUUCugCCacGGUUCCA- -5'
20714 3' -52.6 NC_004688.1 + 31776 0.66 0.937532
Target:  5'- --aGUCGAUGuAGACGGUGCCc---- -3'
miRNA:   3'- augCAGUUGCuUCUGCCACGGuucca -5'
20714 3' -52.6 NC_004688.1 + 30336 0.67 0.932334
Target:  5'- gGCGUCcuCGAuggccacggucAGcCGGUGCCA-GGUg -3'
miRNA:   3'- aUGCAGuuGCU-----------UCuGCCACGGUuCCA- -5'
20714 3' -52.6 NC_004688.1 + 9987 0.67 0.931799
Target:  5'- cUACGaCAACGAcggcuggaucuaaAGGCGGUGCCGc--- -3'
miRNA:   3'- -AUGCaGUUGCU-------------UCUGCCACGGUucca -5'
20714 3' -52.6 NC_004688.1 + 43271 0.67 0.921145
Target:  5'- -uCGUCGGCGGcggucGGCGG-GCUGAGGUc -3'
miRNA:   3'- auGCAGUUGCUu----CUGCCaCGGUUCCA- -5'
20714 3' -52.6 NC_004688.1 + 103408 0.68 0.872264
Target:  5'- gGCGUCGauacucaGCGAGgcGACGGUGUCGgcgagaaGGGUg -3'
miRNA:   3'- aUGCAGU-------UGCUU--CUGCCACGGU-------UCCA- -5'
20714 3' -52.6 NC_004688.1 + 69317 0.69 0.866038
Target:  5'- --gGUUGACGcGGAUGGUGCCGAacGGg -3'
miRNA:   3'- augCAGUUGCuUCUGCCACGGUU--CCa -5'
20714 3' -52.6 NC_004688.1 + 93532 0.69 0.855604
Target:  5'- gGCGgagaCAACGAAGugcgcgcccucgauGCGGaUGCCGGGGa -3'
miRNA:   3'- aUGCa---GUUGCUUC--------------UGCC-ACGGUUCCa -5'
20714 3' -52.6 NC_004688.1 + 12063 0.69 0.8239
Target:  5'- --aGUCAGCgGggGGCGG-GCCAGcGGg -3'
miRNA:   3'- augCAGUUG-CuuCUGCCaCGGUU-CCa -5'
20714 3' -52.6 NC_004688.1 + 93003 0.71 0.747003
Target:  5'- gUGCGgCGGCGAGGGCGcGUGCggucuCAGGGUc -3'
miRNA:   3'- -AUGCaGUUGCUUCUGC-CACG-----GUUCCA- -5'
20714 3' -52.6 NC_004688.1 + 108998 0.72 0.673695
Target:  5'- aUugGUCu-UGAGGAUGGUGCCAGGc- -3'
miRNA:   3'- -AugCAGuuGCUUCUGCCACGGUUCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.