miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20714 5' -54.2 NC_004688.1 + 75425 0.66 0.922377
Target:  5'- aCACCGUGGccCCCUcggaGGCCUUGAa- -3'
miRNA:   3'- cGUGGCACUucGGGAa---CUGGGACUac -5'
20714 5' -54.2 NC_004688.1 + 62380 0.66 0.922377
Target:  5'- gGCgACCGUGAccaaacggccaGGCCCgggGAaCCUGAa- -3'
miRNA:   3'- -CG-UGGCACU-----------UCGGGaa-CUgGGACUac -5'
20714 5' -54.2 NC_004688.1 + 69249 0.66 0.910426
Target:  5'- gGCGCCGcc--GCCCg-GACCgUGGUGg -3'
miRNA:   3'- -CGUGGCacuuCGGGaaCUGGgACUAC- -5'
20714 5' -54.2 NC_004688.1 + 39252 0.66 0.910426
Target:  5'- cCACCGgGAAGCgCUUGGCCUg---- -3'
miRNA:   3'- cGUGGCaCUUCGgGAACUGGGacuac -5'
20714 5' -54.2 NC_004688.1 + 66061 0.66 0.910426
Target:  5'- aGC-CCuUGuuGCCCUUGGCCCacGUGa -3'
miRNA:   3'- -CGuGGcACuuCGGGAACUGGGacUAC- -5'
20714 5' -54.2 NC_004688.1 + 98183 0.66 0.897462
Target:  5'- --gUCGUGAAcGUCUUUGACCCcaGAUGg -3'
miRNA:   3'- cguGGCACUU-CGGGAACUGGGa-CUAC- -5'
20714 5' -54.2 NC_004688.1 + 90323 0.66 0.897462
Target:  5'- aGCGgCGU---GCCCUccagGGCCUUGAUGg -3'
miRNA:   3'- -CGUgGCAcuuCGGGAa---CUGGGACUAC- -5'
20714 5' -54.2 NC_004688.1 + 85745 0.68 0.844535
Target:  5'- cCACgGUGAGGCCC-UGACUUUGc-- -3'
miRNA:   3'- cGUGgCACUUCGGGaACUGGGACuac -5'
20714 5' -54.2 NC_004688.1 + 104928 0.68 0.818614
Target:  5'- cGCGCCGUGc-GCCugCUUGGCCUUGu-- -3'
miRNA:   3'- -CGUGGCACuuCGG--GAACUGGGACuac -5'
20714 5' -54.2 NC_004688.1 + 69170 0.68 0.808687
Target:  5'- cGCgACCGUuggucacGAGGCCCUUGgaGCCCgcggacucGAUGa -3'
miRNA:   3'- -CG-UGGCA-------CUUCGGGAAC--UGGGa-------CUAC- -5'
20714 5' -54.2 NC_004688.1 + 17572 0.69 0.762117
Target:  5'- -gGCCG-GGAGUCCaUGACCCUugggGGUGa -3'
miRNA:   3'- cgUGGCaCUUCGGGaACUGGGA----CUAC- -5'
20714 5' -54.2 NC_004688.1 + 107940 0.69 0.752209
Target:  5'- cGCGCCGccuggagcUGuAGGCCCagcugUUGACCCaGGUGa -3'
miRNA:   3'- -CGUGGC--------AC-UUCGGG-----AACUGGGaCUAC- -5'
20714 5' -54.2 NC_004688.1 + 93945 0.7 0.732064
Target:  5'- gGCGCCGggGAAGCCCcaguagGGCCCa---- -3'
miRNA:   3'- -CGUGGCa-CUUCGGGaa----CUGGGacuac -5'
20714 5' -54.2 NC_004688.1 + 73814 0.71 0.680252
Target:  5'- uCGCCGUGAAGUUCgUGGCCgucgucgcgucgCUGAUGg -3'
miRNA:   3'- cGUGGCACUUCGGGaACUGG------------GACUAC- -5'
20714 5' -54.2 NC_004688.1 + 77022 0.73 0.564113
Target:  5'- cGCGCCGUGGccGCCCaUGACCUucUGGUc -3'
miRNA:   3'- -CGUGGCACUu-CGGGaACUGGG--ACUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.