Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20718 | 3' | -54.9 | NC_004688.1 | + | 9509 | 0.67 | 0.877191 |
Target: 5'- gCUCuCUGACGCCGacaagGUCGCCaucgUACGGg -3' miRNA: 3'- -GAG-GGCUGCGGCcua--UAGUGG----AUGCU- -5' |
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20718 | 3' | -54.9 | NC_004688.1 | + | 16848 | 0.7 | 0.714222 |
Target: 5'- -cCCCGugGCCGGAUucaucccccgcCACCUcuacGCGGc -3' miRNA: 3'- gaGGGCugCGGCCUAua---------GUGGA----UGCU- -5' |
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20718 | 3' | -54.9 | NC_004688.1 | + | 17973 | 0.69 | 0.756036 |
Target: 5'- aUCCCGACGCCagcGGAgaaAUCcACCUggGCGu -3' miRNA: 3'- gAGGGCUGCGG---CCUa--UAG-UGGA--UGCu -5' |
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20718 | 3' | -54.9 | NC_004688.1 | + | 37045 | 0.68 | 0.802244 |
Target: 5'- uUCCCGgauguugGCGCCGGGcccCACCU-CGAa -3' miRNA: 3'- gAGGGC-------UGCGGCCUauaGUGGAuGCU- -5' |
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20718 | 3' | -54.9 | NC_004688.1 | + | 45152 | 0.66 | 0.910732 |
Target: 5'- aCUCCuCGgggcaACGCCGGG-GUCGCCcgGCGc -3' miRNA: 3'- -GAGG-GC-----UGCGGCCUaUAGUGGa-UGCu -5' |
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20718 | 3' | -54.9 | NC_004688.1 | + | 52054 | 0.72 | 0.623282 |
Target: 5'- gUCgCCGGCGCCGGGgccAUCGCCaccaccGCGGu -3' miRNA: 3'- gAG-GGCUGCGGCCUa--UAGUGGa-----UGCU- -5' |
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20718 | 3' | -54.9 | NC_004688.1 | + | 56384 | 0.66 | 0.904502 |
Target: 5'- --gUUGGCGCCGGAggagAUgGCCaGCGAg -3' miRNA: 3'- gagGGCUGCGGCCUa---UAgUGGaUGCU- -5' |
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20718 | 3' | -54.9 | NC_004688.1 | + | 61146 | 0.7 | 0.70609 |
Target: 5'- gUCUggCGGCgGCCGGAUGaCAUCUACGGa -3' miRNA: 3'- gAGG--GCUG-CGGCCUAUaGUGGAUGCU- -5' |
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20718 | 3' | -54.9 | NC_004688.1 | + | 63195 | 0.66 | 0.910732 |
Target: 5'- -cCCCGGCgacgGCCGGAaagaaUGUCAgCgCUGCGGc -3' miRNA: 3'- gaGGGCUG----CGGCCU-----AUAGU-G-GAUGCU- -5' |
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20718 | 3' | -54.9 | NC_004688.1 | + | 64094 | 0.66 | 0.89803 |
Target: 5'- uUCCCGAucacuCGCgGGA--UCGCCcgGCGGg -3' miRNA: 3'- gAGGGCU-----GCGgCCUauAGUGGa-UGCU- -5' |
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20718 | 3' | -54.9 | NC_004688.1 | + | 66708 | 0.66 | 0.916717 |
Target: 5'- uUCCCGGgGCCcugacgGGGUugccguacagaAUCACCgcgACGAu -3' miRNA: 3'- gAGGGCUgCGG------CCUA-----------UAGUGGa--UGCU- -5' |
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20718 | 3' | -54.9 | NC_004688.1 | + | 72539 | 0.71 | 0.664907 |
Target: 5'- aUCCCGGacgcgcUGCCGGAUuucugCACCgACGAa -3' miRNA: 3'- gAGGGCU------GCGGCCUAua---GUGGaUGCU- -5' |
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20718 | 3' | -54.9 | NC_004688.1 | + | 74065 | 0.67 | 0.885075 |
Target: 5'- -aCCCGAaGCCGGugggcuuguugaccGUCACCUGCu- -3' miRNA: 3'- gaGGGCUgCGGCCua------------UAGUGGAUGcu -5' |
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20718 | 3' | -54.9 | NC_004688.1 | + | 74416 | 0.69 | 0.765724 |
Target: 5'- gCUCC--GCGCCGGAcAUUccaACCUGCGGg -3' miRNA: 3'- -GAGGgcUGCGGCCUaUAG---UGGAUGCU- -5' |
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20718 | 3' | -54.9 | NC_004688.1 | + | 75313 | 0.68 | 0.838015 |
Target: 5'- cCUCCauuCGCCGGA--UCGCCaucgUGCGAa -3' miRNA: 3'- -GAGGgcuGCGGCCUauAGUGG----AUGCU- -5' |
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20718 | 3' | -54.9 | NC_004688.1 | + | 78036 | 0.72 | 0.602477 |
Target: 5'- gUCCUGAUGCCaaGGAUGUC-CC-ACGAg -3' miRNA: 3'- gAGGGCUGCGG--CCUAUAGuGGaUGCU- -5' |
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20718 | 3' | -54.9 | NC_004688.1 | + | 79859 | 0.66 | 0.89803 |
Target: 5'- gUCgUCGGCGuuGGcgAUCACC-ACGGg -3' miRNA: 3'- gAG-GGCUGCggCCuaUAGUGGaUGCU- -5' |
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20718 | 3' | -54.9 | NC_004688.1 | + | 82610 | 0.69 | 0.765724 |
Target: 5'- --gCCGACGCCGcGGUAguccUCGCCcacgUGCGAc -3' miRNA: 3'- gagGGCUGCGGC-CUAU----AGUGG----AUGCU- -5' |
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20718 | 3' | -54.9 | NC_004688.1 | + | 85169 | 0.67 | 0.853521 |
Target: 5'- gUCCCGAuuCGCC-GAUggcguacgccacgAUCGCCUGCGc -3' miRNA: 3'- gAGGGCU--GCGGcCUA-------------UAGUGGAUGCu -5' |
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20718 | 3' | -54.9 | NC_004688.1 | + | 86802 | 0.66 | 0.891318 |
Target: 5'- aUCuuGACGUCGGAUuggcCACCgaucCGAu -3' miRNA: 3'- gAGggCUGCGGCCUAua--GUGGau--GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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