miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20723 5' -57.3 NC_004688.1 + 98897 0.66 0.761378
Target:  5'- --cGuGGugccGCACCGAcGGGUAGGACa -3'
miRNA:   3'- uuaCuCCc---CGUGGUUuCCCGUCCUGc -5'
20723 5' -57.3 NC_004688.1 + 55201 0.66 0.761378
Target:  5'- --cGAGGcGCGCCAcuGAGGGCGcuGACa -3'
miRNA:   3'- uuaCUCCcCGUGGU--UUCCCGUc-CUGc -5'
20723 5' -57.3 NC_004688.1 + 76872 0.66 0.755489
Target:  5'- cGUGGGGGGCGucgggggcgucaaauCCGGgucAGGGuCAGGcaGCGg -3'
miRNA:   3'- uUACUCCCCGU---------------GGUU---UCCC-GUCC--UGC- -5'
20723 5' -57.3 NC_004688.1 + 79963 0.66 0.75154
Target:  5'- --cGAccGGGGuCACCAccggguuGGGGguGGGCa -3'
miRNA:   3'- uuaCU--CCCC-GUGGUu------UCCCguCCUGc -5'
20723 5' -57.3 NC_004688.1 + 52930 0.67 0.7214
Target:  5'- ---cGGGGGCACCucGGGGCugcuGGccugugGCGg -3'
miRNA:   3'- uuacUCCCCGUGGuuUCCCGu---CC------UGC- -5'
20723 5' -57.3 NC_004688.1 + 61320 0.67 0.718341
Target:  5'- -cUGAGGGggcgacuacGCACCuucauagaaggacuGGGUAGGGCGa -3'
miRNA:   3'- uuACUCCC---------CGUGGuuu-----------CCCGUCCUGC- -5'
20723 5' -57.3 NC_004688.1 + 26755 0.67 0.710151
Target:  5'- cGAUGgacuccAGGGGCAUCAgGAGGGCGucgcugcGGugGc -3'
miRNA:   3'- -UUAC------UCCCCGUGGU-UUCCCGU-------CCugC- -5'
20723 5' -57.3 NC_004688.1 + 60381 0.67 0.669677
Target:  5'- ----uGGGGC-CC-GAGGGCAGGuCGc -3'
miRNA:   3'- uuacuCCCCGuGGuUUCCCGUCCuGC- -5'
20723 5' -57.3 NC_004688.1 + 12069 0.67 0.669677
Target:  5'- --cGGGGGGCggGCCAgcGGGCuGGcugACGc -3'
miRNA:   3'- uuaCUCCCCG--UGGUuuCCCGuCC---UGC- -5'
20723 5' -57.3 NC_004688.1 + 57358 0.68 0.638178
Target:  5'- --cGAGGGGCuuuu-GGGGCuGGACc -3'
miRNA:   3'- uuaCUCCCCGugguuUCCCGuCCUGc -5'
20723 5' -57.3 NC_004688.1 + 49609 0.68 0.610833
Target:  5'- -uUGuGGGGUaaccagaucgcagucGCCcuggaugaugagGAAGGGCGGGGCGu -3'
miRNA:   3'- uuACuCCCCG---------------UGG------------UUUCCCGUCCUGC- -5'
20723 5' -57.3 NC_004688.1 + 79257 0.72 0.40054
Target:  5'- uGGUGGGGGGCGCCGAAGauGGCGcGG-UGu -3'
miRNA:   3'- -UUACUCCCCGUGGUUUC--CCGU-CCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.