miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20724 3' -51.9 NC_004688.1 + 77322 0.66 0.97308
Target:  5'- cCCGGGCUGacCGGcCUGaccguuGAUACCCAAg- -3'
miRNA:   3'- -GGCCUGAU--GCU-GACc-----CUAUGGGUUau -5'
20724 3' -51.9 NC_004688.1 + 65112 0.66 0.97308
Target:  5'- gUGGGCUGCacgugugacaucGACUGGGAUugCgAu-- -3'
miRNA:   3'- gGCCUGAUG------------CUGACCCUAugGgUuau -5'
20724 3' -51.9 NC_004688.1 + 64712 0.66 0.970139
Target:  5'- gUGGuCgaaugaagcGCGGCUGGGGUAUCCAu-- -3'
miRNA:   3'- gGCCuGa--------UGCUGACCCUAUGGGUuau -5'
20724 3' -51.9 NC_004688.1 + 61214 0.67 0.959952
Target:  5'- uUCGGAUUGCGACgGGGAgcugcgACgCGGc- -3'
miRNA:   3'- -GGCCUGAUGCUGaCCCUa-----UGgGUUau -5'
20724 3' -51.9 NC_004688.1 + 69390 0.67 0.95608
Target:  5'- uUCGGACUgGCGAcCUGGGuuGUACCg---- -3'
miRNA:   3'- -GGCCUGA-UGCU-GACCC--UAUGGguuau -5'
20724 3' -51.9 NC_004688.1 + 61079 0.67 0.951961
Target:  5'- uCUGGAUUuuGACUGGGAUcucuauacGCUCGAc- -3'
miRNA:   3'- -GGCCUGAugCUGACCCUA--------UGGGUUau -5'
20724 3' -51.9 NC_004688.1 + 81470 0.67 0.947591
Target:  5'- gCGGA--AUGcCUGGG-UGCCCAAUAg -3'
miRNA:   3'- gGCCUgaUGCuGACCCuAUGGGUUAU- -5'
20724 3' -51.9 NC_004688.1 + 58783 0.68 0.927537
Target:  5'- cCCGGGCagcuuguuCGGCaucucgcagugGGGAUACCCGAa- -3'
miRNA:   3'- -GGCCUGau------GCUGa----------CCCUAUGGGUUau -5'
20724 3' -51.9 NC_004688.1 + 85149 0.68 0.921871
Target:  5'- gCCGGA--GCGAgUGGGGUcgaguCCCGAUu -3'
miRNA:   3'- -GGCCUgaUGCUgACCCUAu----GGGUUAu -5'
20724 3' -51.9 NC_004688.1 + 93931 0.7 0.867334
Target:  5'- gCGGGCUucaacACGGCgccgGGGAagcCCCAGUAg -3'
miRNA:   3'- gGCCUGA-----UGCUGa---CCCUau-GGGUUAU- -5'
20724 3' -51.9 NC_004688.1 + 67149 0.7 0.859422
Target:  5'- gCGGGCcagggGCGcaGCUGGGAUGCCUu--- -3'
miRNA:   3'- gGCCUGa----UGC--UGACCCUAUGGGuuau -5'
20724 3' -51.9 NC_004688.1 + 102090 0.73 0.687147
Target:  5'- gCCGGACUugGuGCgggccagcGGGGUGCCCGc-- -3'
miRNA:   3'- -GGCCUGAugC-UGa-------CCCUAUGGGUuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.