miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20724 5' -61.4 NC_004688.1 + 103021 0.66 0.628816
Target:  5'- --gGCCGcCAGCCCcaGGCCGAuggccgaagccgccuUCUCGa -3'
miRNA:   3'- gagUGGCaGUCGGG--CCGGCU---------------GGAGCa -5'
20724 5' -61.4 NC_004688.1 + 104128 0.66 0.624805
Target:  5'- --gACCGUgAaCCCGG-CGGCCUCGa -3'
miRNA:   3'- gagUGGCAgUcGGGCCgGCUGGAGCa -5'
20724 5' -61.4 NC_004688.1 + 32307 0.66 0.623803
Target:  5'- aUCcCUGUCGGCCUugcugaaGGCCGauucgauggugGCCUCGa -3'
miRNA:   3'- gAGuGGCAGUCGGG-------CCGGC-----------UGGAGCa -5'
20724 5' -61.4 NC_004688.1 + 80479 0.66 0.623803
Target:  5'- gUCGCCaGggcGCCCgggaacaggucgcGGCCGAUCUCGUa -3'
miRNA:   3'- gAGUGG-CaguCGGG-------------CCGGCUGGAGCA- -5'
20724 5' -61.4 NC_004688.1 + 36178 0.66 0.604774
Target:  5'- --uGCCGUCGGCgCCGauGCCGAUaUCGg -3'
miRNA:   3'- gagUGGCAGUCG-GGC--CGGCUGgAGCa -5'
20724 5' -61.4 NC_004688.1 + 74768 0.66 0.588802
Target:  5'- aCUCGCaCGguugugcgccacggCGGCCauGCCGAUCUCGg -3'
miRNA:   3'- -GAGUG-GCa-------------GUCGGgcCGGCUGGAGCa -5'
20724 5' -61.4 NC_004688.1 + 100178 0.66 0.58482
Target:  5'- --aGCCGUCcGUCaGGUCGACCUCa- -3'
miRNA:   3'- gagUGGCAGuCGGgCCGGCUGGAGca -5'
20724 5' -61.4 NC_004688.1 + 99472 0.66 0.58482
Target:  5'- --uGCCGUCAGCgCGGugccaCCGAUCUCc- -3'
miRNA:   3'- gagUGGCAGUCGgGCC-----GGCUGGAGca -5'
20724 5' -61.4 NC_004688.1 + 54210 0.67 0.55515
Target:  5'- aCUCAuccugcCCGUCAaacGCCgGGCUGACUUCc- -3'
miRNA:   3'- -GAGU------GGCAGU---CGGgCCGGCUGGAGca -5'
20724 5' -61.4 NC_004688.1 + 75234 0.67 0.545354
Target:  5'- aCUCACC--CAGCCCGGgCCGgugGCCUUc- -3'
miRNA:   3'- -GAGUGGcaGUCGGGCC-GGC---UGGAGca -5'
20724 5' -61.4 NC_004688.1 + 52380 0.67 0.535614
Target:  5'- uCUgGCCcagcUCGGCCagauGGCCGcCCUCGUg -3'
miRNA:   3'- -GAgUGGc---AGUCGGg---CCGGCuGGAGCA- -5'
20724 5' -61.4 NC_004688.1 + 107307 0.67 0.525937
Target:  5'- aUCACUGggucCAGCCacauCGGCCGACCa--- -3'
miRNA:   3'- gAGUGGCa---GUCGG----GCCGGCUGGagca -5'
20724 5' -61.4 NC_004688.1 + 7203 0.67 0.516325
Target:  5'- --gGCCGgCGGCUCuGCCGAgCUCGUg -3'
miRNA:   3'- gagUGGCaGUCGGGcCGGCUgGAGCA- -5'
20724 5' -61.4 NC_004688.1 + 56453 0.68 0.497322
Target:  5'- --gGCUGgaguggUGGCCCGGCCGGUCUCGg -3'
miRNA:   3'- gagUGGCa-----GUCGGGCCGGCUGGAGCa -5'
20724 5' -61.4 NC_004688.1 + 45165 0.68 0.487938
Target:  5'- -aCGCCGgggucGCCCGGCgccuagcuugCGGCCUCGg -3'
miRNA:   3'- gaGUGGCagu--CGGGCCG----------GCUGGAGCa -5'
20724 5' -61.4 NC_004688.1 + 90546 0.69 0.451281
Target:  5'- --aGCCGUCGuuGCCgaGGCCGACCgCGg -3'
miRNA:   3'- gagUGGCAGU--CGGg-CCGGCUGGaGCa -5'
20724 5' -61.4 NC_004688.1 + 55483 0.69 0.442353
Target:  5'- aUCGCCGcCgGGCUCGGCUGGCCgaCGa -3'
miRNA:   3'- gAGUGGCaG-UCGGGCCGGCUGGa-GCa -5'
20724 5' -61.4 NC_004688.1 + 54567 0.69 0.433526
Target:  5'- gUCGCCGgcuucCAGCgCGGCC-ACCUCa- -3'
miRNA:   3'- gAGUGGCa----GUCGgGCCGGcUGGAGca -5'
20724 5' -61.4 NC_004688.1 + 66461 0.72 0.280703
Target:  5'- aUCACCGccucguagaUCAGCgucucguuaUGGCCGACCUCGg -3'
miRNA:   3'- gAGUGGC---------AGUCGg--------GCCGGCUGGAGCa -5'
20724 5' -61.4 NC_004688.1 + 103226 0.75 0.196601
Target:  5'- aUCGCCGUCGG-CCGGUUcGCCUCGUc -3'
miRNA:   3'- gAGUGGCAGUCgGGCCGGcUGGAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.