Results 1 - 11 of 11 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20725 | 3' | -53.7 | NC_004688.1 | + | 60372 | 0.7 | 0.742371 |
Target: 5'- uCCGGgaAUUGGGGCCcgagggcAGGUCGCUuCUCa -3' miRNA: 3'- -GGCCa-UGAUUUCGG-------UCCAGCGAcGAG- -5' |
|||||||
20725 | 3' | -53.7 | NC_004688.1 | + | 42025 | 0.67 | 0.904631 |
Target: 5'- aCCGGUcCUGAucgcauaGGCCGGG-CGCccgGcCUCg -3' miRNA: 3'- -GGCCAuGAUU-------UCGGUCCaGCGa--C-GAG- -5' |
|||||||
20725 | 3' | -53.7 | NC_004688.1 | + | 101059 | 0.67 | 0.877452 |
Target: 5'- cCCGGaugucGCUcuuaucgagggAGGGCCGGGUCGUUuaUCg -3' miRNA: 3'- -GGCCa----UGA-----------UUUCGGUCCAGCGAcgAG- -5' |
|||||||
20725 | 3' | -53.7 | NC_004688.1 | + | 79390 | 0.67 | 0.875959 |
Target: 5'- gCGG-GC-GAGGCCGGGguggaccaggaGCUGCUCg -3' miRNA: 3'- gGCCaUGaUUUCGGUCCag---------CGACGAG- -5' |
|||||||
20725 | 3' | -53.7 | NC_004688.1 | + | 93688 | 0.67 | 0.869892 |
Target: 5'- gUCGGUuuc--GGCUAGG-CGCUGCUUu -3' miRNA: 3'- -GGCCAugauuUCGGUCCaGCGACGAG- -5' |
|||||||
20725 | 3' | -53.7 | NC_004688.1 | + | 23866 | 0.68 | 0.862101 |
Target: 5'- -gGGUcuucaACUcuucgGAGGUCAGGUCGCUGaUCa -3' miRNA: 3'- ggCCA-----UGA-----UUUCGGUCCAGCGACgAG- -5' |
|||||||
20725 | 3' | -53.7 | NC_004688.1 | + | 93427 | 0.68 | 0.845852 |
Target: 5'- gCCGGgugaAC-GAAGUCGGGUgCGgUGCUCc -3' miRNA: 3'- -GGCCa---UGaUUUCGGUCCA-GCgACGAG- -5' |
|||||||
20725 | 3' | -53.7 | NC_004688.1 | + | 33784 | 0.68 | 0.828765 |
Target: 5'- aCGauGUGCU--GGCCGGuGUCGUUGCUg -3' miRNA: 3'- gGC--CAUGAuuUCGGUC-CAGCGACGAg -5' |
|||||||
20725 | 3' | -53.7 | NC_004688.1 | + | 99932 | 0.69 | 0.810904 |
Target: 5'- uCUGGUGCUucu-CCAGGgCGCUGC-Cg -3' miRNA: 3'- -GGCCAUGAuuucGGUCCaGCGACGaG- -5' |
|||||||
20725 | 3' | -53.7 | NC_004688.1 | + | 82274 | 0.69 | 0.781862 |
Target: 5'- gCGGUGCagGAAGUCcuggaagaacgggAGGUC-CUGCUCg -3' miRNA: 3'- gGCCAUGa-UUUCGG-------------UCCAGcGACGAG- -5' |
|||||||
20725 | 3' | -53.7 | NC_004688.1 | + | 98604 | 0.66 | 0.917685 |
Target: 5'- --cGUACccgauGCCGGGcUGCUGCUCg -3' miRNA: 3'- ggcCAUGauuu-CGGUCCaGCGACGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home