miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20729 5' -61 NC_004688.1 + 92960 0.66 0.598702
Target:  5'- aCG-GGGGUGACGUgCCAG-CCG-CAAg -3'
miRNA:   3'- cGCaCCCCGCUGCA-GGUCuGGCcGUU- -5'
20729 5' -61 NC_004688.1 + 100486 0.66 0.598702
Target:  5'- aUGUGGcGGCGcagGCGcUCCuuGGCCGGCu- -3'
miRNA:   3'- cGCACC-CCGC---UGC-AGGu-CUGGCCGuu -5'
20729 5' -61 NC_004688.1 + 40341 0.66 0.597693
Target:  5'- aGCGaaggucagGGGGCGGCcgaagucGUCCAGcgcCCGGUGAu -3'
miRNA:   3'- -CGCa-------CCCCGCUG-------CAGGUCu--GGCCGUU- -5'
20729 5' -61 NC_004688.1 + 69378 0.66 0.588631
Target:  5'- -gGUGGuGGCG-CcUUCGGACUGGCGAc -3'
miRNA:   3'- cgCACC-CCGCuGcAGGUCUGGCCGUU- -5'
20729 5' -61 NC_004688.1 + 20969 0.67 0.548721
Target:  5'- cGgGUGGGuGCGGCGgcucgccgCCuGGCCGGgGu -3'
miRNA:   3'- -CgCACCC-CGCUGCa-------GGuCUGGCCgUu -5'
20729 5' -61 NC_004688.1 + 90824 0.67 0.51935
Target:  5'- --cUGGGGCGGCagcuUCCGGaacgaaGCCGGCGGg -3'
miRNA:   3'- cgcACCCCGCUGc---AGGUC------UGGCCGUU- -5'
20729 5' -61 NC_004688.1 + 93851 0.68 0.496308
Target:  5'- uGCGUGGGGCaugGAUGgugcagcccauacCCAGuCCGGCc- -3'
miRNA:   3'- -CGCACCCCG---CUGCa------------GGUCuGGCCGuu -5'
20729 5' -61 NC_004688.1 + 66295 0.69 0.435539
Target:  5'- gGCG-GGGccgaucGUGuACGUCCAGugCGGCGc -3'
miRNA:   3'- -CGCaCCC------CGC-UGCAGGUCugGCCGUu -5'
20729 5' -61 NC_004688.1 + 56578 0.7 0.368003
Target:  5'- gGCGgccGGGGaacaccagGGCGUCCGGauugGCCGGCAu -3'
miRNA:   3'- -CGCa--CCCCg-------CUGCAGGUC----UGGCCGUu -5'
20729 5' -61 NC_004688.1 + 39709 0.71 0.337038
Target:  5'- gGCGccgGGGGCG-CGUCCAGccauUCGGCu- -3'
miRNA:   3'- -CGCa--CCCCGCuGCAGGUCu---GGCCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.