miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2073 3' -49.9 NC_001348.1 + 51569 0.66 0.99314
Target:  5'- -cUGCCguCGCCCGAGGAGcggcccaccuuGCuuuUGAUGa -3'
miRNA:   3'- cuAUGG--GCGGGUUCCUU-----------UGu--ACUACg -5'
2073 3' -49.9 NC_001348.1 + 107313 0.66 0.992069
Target:  5'- cGGUACCCGCCCGucccGGugGCAaca-GCu -3'
miRNA:   3'- -CUAUGGGCGGGUu---CCuuUGUacuaCG- -5'
2073 3' -49.9 NC_001348.1 + 122479 0.66 0.992069
Target:  5'- cGGUACCCGCCCGucccGGugGCAaca-GCu -3'
miRNA:   3'- -CUAUGGGCGGGUu---CCuuUGUacuaCG- -5'
2073 3' -49.9 NC_001348.1 + 120068 0.66 0.991723
Target:  5'- cGUG-CCGCCUgacauaaucguuggGAGGGGugGUGGUGUa -3'
miRNA:   3'- cUAUgGGCGGG--------------UUCCUUugUACUACG- -5'
2073 3' -49.9 NC_001348.1 + 109724 0.66 0.991723
Target:  5'- cGUG-CCGCCUgacauaaucguuggGAGGGGugGUGGUGUa -3'
miRNA:   3'- cUAUgGGCGGG--------------UUCCUUugUACUACG- -5'
2073 3' -49.9 NC_001348.1 + 121358 0.67 0.982595
Target:  5'- --gGCCCGCUCAGGGAAagaGCccGAa-- -3'
miRNA:   3'- cuaUGGGCGGGUUCCUU---UGuaCUacg -5'
2073 3' -49.9 NC_001348.1 + 108434 0.67 0.982595
Target:  5'- --gGCCCGCUCAGGGAAagaGCccGAa-- -3'
miRNA:   3'- cuaUGGGCGGGUUCCUU---UGuaCUacg -5'
2073 3' -49.9 NC_001348.1 + 61269 0.68 0.975455
Target:  5'- --gGCCCGCCgGGGuGGAAUGUGgcGUu -3'
miRNA:   3'- cuaUGGGCGGgUUC-CUUUGUACuaCG- -5'
2073 3' -49.9 NC_001348.1 + 73879 0.69 0.959154
Target:  5'- --gACCCGUUCGGGGAGACAcgGGUc- -3'
miRNA:   3'- cuaUGGGCGGGUUCCUUUGUa-CUAcg -5'
2073 3' -49.9 NC_001348.1 + 106861 0.73 0.829793
Target:  5'- gGAUACCCGCCUcuuggccuuGGAAaccACAUGAucgucUGCa -3'
miRNA:   3'- -CUAUGGGCGGGuu-------CCUU---UGUACU-----ACG- -5'
2073 3' -49.9 NC_001348.1 + 122930 0.73 0.829793
Target:  5'- gGAUACCCGCCUcuuggccuuGGAAaccACAUGAucgucUGCa -3'
miRNA:   3'- -CUAUGGGCGGGuu-------CCUU---UGUACU-----ACG- -5'
2073 3' -49.9 NC_001348.1 + 121527 1.12 0.005882
Target:  5'- uGAUACCCGCCCAAGGAAACAUGAUGCc -3'
miRNA:   3'- -CUAUGGGCGGGUUCCUUUGUACUACG- -5'
2073 3' -49.9 NC_001348.1 + 108265 1.12 0.005882
Target:  5'- uGAUACCCGCCCAAGGAAACAUGAUGCc -3'
miRNA:   3'- -CUAUGGGCGGGUUCCUUUGUACUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.