miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2073 5' -55.1 NC_001348.1 + 85338 0.66 0.900953
Target:  5'- gGACuuauaggCGCGUCgUUGGACGUUCu -3'
miRNA:   3'- aUUGugga---GCGCAGgGACCUGCAAGc -5'
2073 5' -55.1 NC_001348.1 + 47171 0.67 0.857924
Target:  5'- uUAACAaCUCGUGUCUCUGGAauaaaaCGUUUu -3'
miRNA:   3'- -AUUGUgGAGCGCAGGGACCU------GCAAGc -5'
2073 5' -55.1 NC_001348.1 + 67948 0.69 0.770259
Target:  5'- cAAUACCUCGUuaagUCCUGGGCGUgUUGg -3'
miRNA:   3'- aUUGUGGAGCGca--GGGACCUGCA-AGC- -5'
2073 5' -55.1 NC_001348.1 + 121561 1.07 0.003985
Target:  5'- aUAACACCUCGCGUCCCUGGACGUUCGu -3'
miRNA:   3'- -AUUGUGGAGCGCAGGGACCUGCAAGC- -5'
2073 5' -55.1 NC_001348.1 + 108231 1.07 0.003985
Target:  5'- aUAACACCUCGCGUCCCUGGACGUUCGu -3'
miRNA:   3'- -AUUGUGGAGCGCAGGGACCUGCAAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.