miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20732 3' -57.9 NC_004688.1 + 108749 0.67 0.711178
Target:  5'- uGCCGuCGGCAACCCUGaacaGGUGuCCCAGg -3'
miRNA:   3'- cUGGU-GCUGUUGGGGCg---UUGC-GGGUC- -5'
20732 3' -57.9 NC_004688.1 + 101026 0.67 0.701087
Target:  5'- -cCCGCGGCuGCCguagcuacguCCGCGGgccCGCCCGGa -3'
miRNA:   3'- cuGGUGCUGuUGG----------GGCGUU---GCGGGUC- -5'
20732 3' -57.9 NC_004688.1 + 34804 0.67 0.701087
Target:  5'- uACCACGuCGAagCCCGCGGCccuCCCGGu -3'
miRNA:   3'- cUGGUGCuGUUg-GGGCGUUGc--GGGUC- -5'
20732 3' -57.9 NC_004688.1 + 6373 0.67 0.701087
Target:  5'- gGACC-CGGCGACuucaugucaCCCGCGgACGUCCGc -3'
miRNA:   3'- -CUGGuGCUGUUG---------GGGCGU-UGCGGGUc -5'
20732 3' -57.9 NC_004688.1 + 100831 0.67 0.690937
Target:  5'- cGACUGCuuCAACCgCCGCcGCGCgCAGu -3'
miRNA:   3'- -CUGGUGcuGUUGG-GGCGuUGCGgGUC- -5'
20732 3' -57.9 NC_004688.1 + 71703 0.67 0.690937
Target:  5'- gGACC-CGuuGGCCCCgGCAcCGCCCc- -3'
miRNA:   3'- -CUGGuGCugUUGGGG-CGUuGCGGGuc -5'
20732 3' -57.9 NC_004688.1 + 36202 0.67 0.690937
Target:  5'- cGGCCAgGACAugCCCGaUGAUGCaCuCGGg -3'
miRNA:   3'- -CUGGUgCUGUugGGGC-GUUGCG-G-GUC- -5'
20732 3' -57.9 NC_004688.1 + 50888 0.67 0.680738
Target:  5'- cGGCC-CGAgGguGCCaCCGCGccggcgaccaaGCGCCCGGu -3'
miRNA:   3'- -CUGGuGCUgU--UGG-GGCGU-----------UGCGGGUC- -5'
20732 3' -57.9 NC_004688.1 + 96995 0.67 0.680738
Target:  5'- cGCCAaGGCcuCCCCGUgggcuaGGCGCCCAu -3'
miRNA:   3'- cUGGUgCUGuuGGGGCG------UUGCGGGUc -5'
20732 3' -57.9 NC_004688.1 + 107245 0.67 0.680738
Target:  5'- cGGCCugGAguACCCCGUuAC-CCCu- -3'
miRNA:   3'- -CUGGugCUguUGGGGCGuUGcGGGuc -5'
20732 3' -57.9 NC_004688.1 + 86619 0.68 0.664338
Target:  5'- cGGCCcgcguucggguuccaGCGACGGCgUCCGUcGCGCCCGu -3'
miRNA:   3'- -CUGG---------------UGCUGUUG-GGGCGuUGCGGGUc -5'
20732 3' -57.9 NC_004688.1 + 47653 0.68 0.6489
Target:  5'- uGCUGCGGCAgucugucGCCaCCGCGACugGUCCGGg -3'
miRNA:   3'- cUGGUGCUGU-------UGG-GGCGUUG--CGGGUC- -5'
20732 3' -57.9 NC_004688.1 + 88710 0.68 0.618994
Target:  5'- cGCguCGGCAACCCUGUucauCGCCCu- -3'
miRNA:   3'- cUGguGCUGUUGGGGCGuu--GCGGGuc -5'
20732 3' -57.9 NC_004688.1 + 87968 0.69 0.598406
Target:  5'- uGCCgAUGACGcccaggucGCCgCCGCGGCGCCUAc -3'
miRNA:   3'- cUGG-UGCUGU--------UGG-GGCGUUGCGGGUc -5'
20732 3' -57.9 NC_004688.1 + 106414 0.69 0.577919
Target:  5'- uGCUcCGGCAAUUCgGCAAUGCCCAu -3'
miRNA:   3'- cUGGuGCUGUUGGGgCGUUGCGGGUc -5'
20732 3' -57.9 NC_004688.1 + 63516 0.69 0.577919
Target:  5'- -cCCACGACGugggcGCCgCCGCAGCcgaaGCCCuGa -3'
miRNA:   3'- cuGGUGCUGU-----UGG-GGCGUUG----CGGGuC- -5'
20732 3' -57.9 NC_004688.1 + 105596 0.69 0.573838
Target:  5'- cGCCAacCGugAagcGCCCCGCAuuggugucgccguCGCCCAGc -3'
miRNA:   3'- cUGGU--GCugU---UGGGGCGUu------------GCGGGUC- -5'
20732 3' -57.9 NC_004688.1 + 102104 0.69 0.567731
Target:  5'- gGGCCAgCGGgGugCCCGCGugGUucaCCAGa -3'
miRNA:   3'- -CUGGU-GCUgUugGGGCGUugCG---GGUC- -5'
20732 3' -57.9 NC_004688.1 + 38050 0.69 0.567731
Target:  5'- gGACCAgcaGAUcuucuuGGCCuCCGCGGCGCCCu- -3'
miRNA:   3'- -CUGGUg--CUG------UUGG-GGCGUUGCGGGuc -5'
20732 3' -57.9 NC_004688.1 + 90023 0.69 0.557588
Target:  5'- aGGCCGCGcCAguccgcACCCuCGCggUGCCaCAGa -3'
miRNA:   3'- -CUGGUGCuGU------UGGG-GCGuuGCGG-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.