miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20734 3' -56 NC_004688.1 + 7571 0.66 0.878339
Target:  5'- --uGAGCGGgacucguucgaUGAGCCGACCaUCgUGGa -3'
miRNA:   3'- acuCUUGCC-----------GCUCGGUUGGcAGgACC- -5'
20734 3' -56 NC_004688.1 + 98461 0.66 0.878339
Target:  5'- -cAGAAgGGCGugcAGCCAGCCGUUa--- -3'
miRNA:   3'- acUCUUgCCGC---UCGGUUGGCAGgacc -5'
20734 3' -56 NC_004688.1 + 5650 0.66 0.871005
Target:  5'- cGAGAACGGCG---CAACCaUCgUGGu -3'
miRNA:   3'- aCUCUUGCCGCucgGUUGGcAGgACC- -5'
20734 3' -56 NC_004688.1 + 58738 0.66 0.863452
Target:  5'- cGAGGACGaCGAguuccccccaGCUGACCGauuggCCUGGu -3'
miRNA:   3'- aCUCUUGCcGCU----------CGGUUGGCa----GGACC- -5'
20734 3' -56 NC_004688.1 + 94963 0.66 0.863452
Target:  5'- -cAGAuuuGCGGCGGGCUAuuGCgCGUCCg-- -3'
miRNA:   3'- acUCU---UGCCGCUCGGU--UG-GCAGGacc -5'
20734 3' -56 NC_004688.1 + 102158 0.66 0.861144
Target:  5'- gGAGAgucuucucgaaggcACGGCGAuCCAGCUGUUCg-- -3'
miRNA:   3'- aCUCU--------------UGCCGCUcGGUUGGCAGGacc -5'
20734 3' -56 NC_004688.1 + 90528 0.66 0.855685
Target:  5'- cGGcGAACGGCGAGaagaAGCCGUCgUUGc -3'
miRNA:   3'- aCU-CUUGCCGCUCgg--UUGGCAG-GACc -5'
20734 3' -56 NC_004688.1 + 80145 0.66 0.855685
Target:  5'- uUGAcAACGGUGAcCCGACCGUCgaaGGu -3'
miRNA:   3'- -ACUcUUGCCGCUcGGUUGGCAGga-CC- -5'
20734 3' -56 NC_004688.1 + 69936 0.66 0.855685
Target:  5'- -uGGAGCgGGUGAcucgGCCGuccACuCGUCCUGGc -3'
miRNA:   3'- acUCUUG-CCGCU----CGGU---UG-GCAGGACC- -5'
20734 3' -56 NC_004688.1 + 47862 0.66 0.84771
Target:  5'- gUGAGGGCaccGGCGAuGCCGAUguggaaGUCCUcGGc -3'
miRNA:   3'- -ACUCUUG---CCGCU-CGGUUGg-----CAGGA-CC- -5'
20734 3' -56 NC_004688.1 + 20908 0.66 0.84771
Target:  5'- gGAGAACGGCaccuuuccgGuGCCuacGgCGUCCUuGGg -3'
miRNA:   3'- aCUCUUGCCG---------CuCGGu--UgGCAGGA-CC- -5'
20734 3' -56 NC_004688.1 + 7106 0.66 0.846901
Target:  5'- gGGGAuaccGCGGCGGGCCGGagauugCGUCUacggugcgccaaaUGGa -3'
miRNA:   3'- aCUCU----UGCCGCUCGGUUg-----GCAGG-------------ACC- -5'
20734 3' -56 NC_004688.1 + 97676 0.66 0.839535
Target:  5'- cGAGAAUGuaGAuGCCG-CCGUCCg-- -3'
miRNA:   3'- aCUCUUGCcgCU-CGGUuGGCAGGacc -5'
20734 3' -56 NC_004688.1 + 50052 0.66 0.839535
Target:  5'- cUGGccGCGGCGGucGCCAAUgGUCCaGGc -3'
miRNA:   3'- -ACUcuUGCCGCU--CGGUUGgCAGGaCC- -5'
20734 3' -56 NC_004688.1 + 27961 0.66 0.838706
Target:  5'- cGAGGuagGCGGgGAccgGCCAguggccuauugucACCGucUCCUGGg -3'
miRNA:   3'- aCUCU---UGCCgCU---CGGU-------------UGGC--AGGACC- -5'
20734 3' -56 NC_004688.1 + 61873 0.67 0.813879
Target:  5'- cGAGggU-GCGAGUCGGCCGcCCagcucgUGGa -3'
miRNA:   3'- aCUCuuGcCGCUCGGUUGGCaGG------ACC- -5'
20734 3' -56 NC_004688.1 + 12067 0.67 0.804978
Target:  5'- aGcGGGgGGCGGGCCAGCgGg-CUGGc -3'
miRNA:   3'- aCuCUUgCCGCUCGGUUGgCagGACC- -5'
20734 3' -56 NC_004688.1 + 86296 0.67 0.795916
Target:  5'- cGAGcGCGGCGcGCCgAACCuucUCCUGc -3'
miRNA:   3'- aCUCuUGCCGCuCGG-UUGGc--AGGACc -5'
20734 3' -56 NC_004688.1 + 83139 0.68 0.786702
Target:  5'- --uGGACaGCGAcGCCAggGCCGUCUUGa -3'
miRNA:   3'- acuCUUGcCGCU-CGGU--UGGCAGGACc -5'
20734 3' -56 NC_004688.1 + 77556 0.68 0.777345
Target:  5'- cGAcGACGGCGGGCUAuCCGgcgacguguuguUUCUGGu -3'
miRNA:   3'- aCUcUUGCCGCUCGGUuGGC------------AGGACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.