miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20734 3' -56 NC_004688.1 + 77556 0.68 0.777345
Target:  5'- cGAcGACGGCGGGCUAuCCGgcgacguguuguUUCUGGu -3'
miRNA:   3'- aCUcUUGCCGCUCGGUuGGC------------AGGACC- -5'
20734 3' -56 NC_004688.1 + 25603 0.68 0.777345
Target:  5'- ---uGAUGGCG-GCCAgcGCCG-CCUGGu -3'
miRNA:   3'- acucUUGCCGCuCGGU--UGGCaGGACC- -5'
20734 3' -56 NC_004688.1 + 26295 0.68 0.776402
Target:  5'- aUGAGGuCGGCGAucuucuuGCCGuaguCCGUCCa-- -3'
miRNA:   3'- -ACUCUuGCCGCU-------CGGUu---GGCAGGacc -5'
20734 3' -56 NC_004688.1 + 100597 0.68 0.748514
Target:  5'- uUGAccucGACGGUGGccuuGCgGACCGUCUUGGu -3'
miRNA:   3'- -ACUc---UUGCCGCU----CGgUUGGCAGGACC- -5'
20734 3' -56 NC_004688.1 + 77791 0.68 0.748514
Target:  5'- gGGGAAUGGUGcGCCAG-CGUCCa-- -3'
miRNA:   3'- aCUCUUGCCGCuCGGUUgGCAGGacc -5'
20734 3' -56 NC_004688.1 + 94195 0.69 0.728752
Target:  5'- uUGGGGcaucGCGGCGGGCCAACgGgUUCUc- -3'
miRNA:   3'- -ACUCU----UGCCGCUCGGUUGgC-AGGAcc -5'
20734 3' -56 NC_004688.1 + 43459 0.69 0.687255
Target:  5'- gUGAG-GCGGCGGuGCCAuucacauACCGggccauacCCUGGg -3'
miRNA:   3'- -ACUCuUGCCGCU-CGGU-------UGGCa-------GGACC- -5'
20734 3' -56 NC_004688.1 + 52325 0.7 0.678017
Target:  5'- aUGAGcggcAGCGGCGcauGGCCAucCUGuUCCUGGu -3'
miRNA:   3'- -ACUC----UUGCCGC---UCGGUu-GGC-AGGACC- -5'
20734 3' -56 NC_004688.1 + 13597 0.7 0.636675
Target:  5'- cGucuGCGGCGAGaaAGCCGugaUCCUGGa -3'
miRNA:   3'- aCucuUGCCGCUCggUUGGC---AGGACC- -5'
20734 3' -56 NC_004688.1 + 90338 0.7 0.626309
Target:  5'- aGGGccuuGAUGGUGAuGCCAucGuuGUCCUGGg -3'
miRNA:   3'- aCUC----UUGCCGCU-CGGU--UggCAGGACC- -5'
20734 3' -56 NC_004688.1 + 6842 0.71 0.620091
Target:  5'- cGAGGAUGGCGAGaCguucgaccauugguuCGACCGUgUUGGu -3'
miRNA:   3'- aCUCUUGCCGCUC-G---------------GUUGGCAgGACC- -5'
20734 3' -56 NC_004688.1 + 109126 0.71 0.615947
Target:  5'- cGAGGGCGGCGuacGUUuuACCGUucugCCUGGg -3'
miRNA:   3'- aCUCUUGCCGCu--CGGu-UGGCA----GGACC- -5'
20734 3' -56 NC_004688.1 + 71360 0.71 0.574702
Target:  5'- cGAGAugGGCGAGCUGACCagugaaauGUUCg-- -3'
miRNA:   3'- aCUCUugCCGCUCGGUUGG--------CAGGacc -5'
20734 3' -56 NC_004688.1 + 79985 0.71 0.564478
Target:  5'- gGGGGugGGC-AGCgGAUCGUCCgGGu -3'
miRNA:   3'- aCUCUugCCGcUCGgUUGGCAGGaCC- -5'
20734 3' -56 NC_004688.1 + 17591 0.72 0.554303
Target:  5'- uUGGGggUGauGCGcAGCCGGCCGUCUucuuUGGu -3'
miRNA:   3'- -ACUCuuGC--CGC-UCGGUUGGCAGG----ACC- -5'
20734 3' -56 NC_004688.1 + 34985 0.73 0.494603
Target:  5'- aGAGGGCGGCGGGCCccAGCUucgcgggCUUGGg -3'
miRNA:   3'- aCUCUUGCCGCUCGG--UUGGca-----GGACC- -5'
20734 3' -56 NC_004688.1 + 20972 0.73 0.484928
Target:  5'- gUGGGuGCGGCG-GCUcGCCG-CCUGGc -3'
miRNA:   3'- -ACUCuUGCCGCuCGGuUGGCaGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.