Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20735 | 3' | -53.7 | NC_004688.1 | + | 17147 | 0.66 | 0.923503 |
Target: 5'- gGUCUCuGAGGCCaucGGUACC-CUcGCUCc -3' miRNA: 3'- -CGGAGuCUCUGG---CUAUGGuGA-CGAGu -5' |
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20735 | 3' | -53.7 | NC_004688.1 | + | 86579 | 0.66 | 0.91161 |
Target: 5'- cGCgUCAGcaggugccGGGCCGAUGCCcgugguagcGCUGCg-- -3' miRNA: 3'- -CGgAGUC--------UCUGGCUAUGG---------UGACGagu -5' |
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20735 | 3' | -53.7 | NC_004688.1 | + | 86655 | 0.67 | 0.898693 |
Target: 5'- cGCCcgUGGGGACCGuUGCCGgUGCcCGg -3' miRNA: 3'- -CGGa-GUCUCUGGCuAUGGUgACGaGU- -5' |
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20735 | 3' | -53.7 | NC_004688.1 | + | 45949 | 0.68 | 0.845852 |
Target: 5'- gGCgUC-GAGGCCGG--UCAUUGCUCAg -3' miRNA: 3'- -CGgAGuCUCUGGCUauGGUGACGAGU- -5' |
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20735 | 3' | -53.7 | NC_004688.1 | + | 51629 | 0.68 | 0.828765 |
Target: 5'- aCCUCggcaugguGGAGACCGA-GCgGCUGCUgGa -3' miRNA: 3'- cGGAG--------UCUCUGGCUaUGgUGACGAgU- -5' |
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20735 | 3' | -53.7 | NC_004688.1 | + | 101429 | 0.69 | 0.792343 |
Target: 5'- cCCUCGG-GGCCGGUcucgcggaACCAUcGCUCGg -3' miRNA: 3'- cGGAGUCuCUGGCUA--------UGGUGaCGAGU- -5' |
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20735 | 3' | -53.7 | NC_004688.1 | + | 101188 | 0.69 | 0.782823 |
Target: 5'- aGCCUCGcGaAGGCUGAUGCCGCcuucgGCgUCGu -3' miRNA: 3'- -CGGAGU-C-UCUGGCUAUGGUGa----CG-AGU- -5' |
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20735 | 3' | -53.7 | NC_004688.1 | + | 59491 | 0.7 | 0.750424 |
Target: 5'- gGUCUCGGgucgcggucgcaccGGGCCGGUccuACCGgCUGCUCGc -3' miRNA: 3'- -CGGAGUC--------------UCUGGCUA---UGGU-GACGAGU- -5' |
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20735 | 3' | -53.7 | NC_004688.1 | + | 82189 | 0.7 | 0.733232 |
Target: 5'- uGCCUugCGGGGGCuCGAUGCCGaagaUGCUUu -3' miRNA: 3'- -CGGA--GUCUCUG-GCUAUGGUg---ACGAGu -5' |
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20735 | 3' | -53.7 | NC_004688.1 | + | 13302 | 0.71 | 0.702256 |
Target: 5'- gGCUUCcucGGCCGAUGCCGCggucauccgGCUCAu -3' miRNA: 3'- -CGGAGucuCUGGCUAUGGUGa--------CGAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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