miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20736 3' -50.7 NC_004688.1 + 27692 0.66 0.984501
Target:  5'- --aCAUCCGCgGGCGguuggGGGUGUuGCGCGg -3'
miRNA:   3'- gaaGUGGGCG-UUGU-----UCUACGuUGCGC- -5'
20736 3' -50.7 NC_004688.1 + 20753 0.66 0.982502
Target:  5'- uCUUCGCCCucccacCAGCGGGugagGUGGCGCa -3'
miRNA:   3'- -GAAGUGGGc-----GUUGUUCua--CGUUGCGc -5'
20736 3' -50.7 NC_004688.1 + 2682 0.66 0.982502
Target:  5'- --aCGCgCGCAGCAucGAacuuaGCGGCGCGg -3'
miRNA:   3'- gaaGUGgGCGUUGUu-CUa----CGUUGCGC- -5'
20736 3' -50.7 NC_004688.1 + 37378 0.66 0.982502
Target:  5'- --gCGCCCugcggcgggGCAGCAAGuUGCAGCucGCGc -3'
miRNA:   3'- gaaGUGGG---------CGUUGUUCuACGUUG--CGC- -5'
20736 3' -50.7 NC_004688.1 + 42278 0.66 0.977929
Target:  5'- aUUCGCCCGCGAUcguucuCAGCGCu -3'
miRNA:   3'- gAAGUGGGCGUUGuucuacGUUGCGc -5'
20736 3' -50.7 NC_004688.1 + 15533 0.67 0.975337
Target:  5'- ---gGCCCuCAACGcggGGAUGCGACgGCGc -3'
miRNA:   3'- gaagUGGGcGUUGU---UCUACGUUG-CGC- -5'
20736 3' -50.7 NC_004688.1 + 6416 0.67 0.975337
Target:  5'- --aCACCUGCGACGAGuaccgauuccGUGACGCc -3'
miRNA:   3'- gaaGUGGGCGUUGUUCua--------CGUUGCGc -5'
20736 3' -50.7 NC_004688.1 + 96129 0.67 0.975337
Target:  5'- -aUCcCCCGCGACAcccaAGAagGCucCGCGg -3'
miRNA:   3'- gaAGuGGGCGUUGU----UCUa-CGuuGCGC- -5'
20736 3' -50.7 NC_004688.1 + 51740 0.67 0.972529
Target:  5'- --gCGCCCGU--CAGGAUGCucCGCc -3'
miRNA:   3'- gaaGUGGGCGuuGUUCUACGuuGCGc -5'
20736 3' -50.7 NC_004688.1 + 28278 0.67 0.969498
Target:  5'- aUUCGCUCGUAAUAcucggcgucguAGAUGC-GCGCc -3'
miRNA:   3'- gAAGUGGGCGUUGU-----------UCUACGuUGCGc -5'
20736 3' -50.7 NC_004688.1 + 52315 0.67 0.966235
Target:  5'- -cUCGUCUGCGAUGAGcgGCAGCgGCGc -3'
miRNA:   3'- gaAGUGGGCGUUGUUCuaCGUUG-CGC- -5'
20736 3' -50.7 NC_004688.1 + 18934 0.67 0.962005
Target:  5'- --cCACCCGCGcgagccggugacCAGGAcccccggGCAACGCGa -3'
miRNA:   3'- gaaGUGGGCGUu-----------GUUCUa------CGUUGCGC- -5'
20736 3' -50.7 NC_004688.1 + 27322 0.68 0.958988
Target:  5'- aUUCGCCCauGCGAuCGAGcuuggcucGCAGCGCGu -3'
miRNA:   3'- gAAGUGGG--CGUU-GUUCua------CGUUGCGC- -5'
20736 3' -50.7 NC_004688.1 + 84806 0.68 0.954991
Target:  5'- --cCGCCCGCAGCAccGGggGCAcgGCu -3'
miRNA:   3'- gaaGUGGGCGUUGU--UCuaCGUugCGc -5'
20736 3' -50.7 NC_004688.1 + 929 0.68 0.950738
Target:  5'- -aUCAUCCGCAACGcaGU-CAACGCu -3'
miRNA:   3'- gaAGUGGGCGUUGUucUAcGUUGCGc -5'
20736 3' -50.7 NC_004688.1 + 79464 0.68 0.950738
Target:  5'- -aUUGCCCGCgGACAccguugGCAGCGCGc -3'
miRNA:   3'- gaAGUGGGCG-UUGUucua--CGUUGCGC- -5'
20736 3' -50.7 NC_004688.1 + 85995 0.68 0.950738
Target:  5'- -aUCGCCUGCAGC-GGAgcCGugGCGa -3'
miRNA:   3'- gaAGUGGGCGUUGuUCUacGUugCGC- -5'
20736 3' -50.7 NC_004688.1 + 57677 0.68 0.950298
Target:  5'- --aCGCCCGCAucggccgGCGAguGAUGgucCAGCGCGa -3'
miRNA:   3'- gaaGUGGGCGU-------UGUU--CUAC---GUUGCGC- -5'
20736 3' -50.7 NC_004688.1 + 94629 0.68 0.946224
Target:  5'- uCUUCAUCgGCAAUGAGcgaaAUGCcGCGCu -3'
miRNA:   3'- -GAAGUGGgCGUUGUUC----UACGuUGCGc -5'
20736 3' -50.7 NC_004688.1 + 11858 0.68 0.941447
Target:  5'- gUUCACCCGCAccccggaaauGCuGGG-GC-ACGCGg -3'
miRNA:   3'- gAAGUGGGCGU----------UGuUCUaCGuUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.