miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20741 5' -64.7 NC_004688.1 + 86313 0.66 0.39756
Target:  5'- cGUGGC-CcGCGCGuCCCCCAgUG-CGGa -3'
miRNA:   3'- -UACCGcGaCGCGC-GGGGGUgACcGUC- -5'
20741 5' -64.7 NC_004688.1 + 94597 0.66 0.373006
Target:  5'- -gGGUGaCUGgGCGCCCauCCACcagGGCGa -3'
miRNA:   3'- uaCCGC-GACgCGCGGG--GGUGa--CCGUc -5'
20741 5' -64.7 NC_004688.1 + 45061 0.67 0.357219
Target:  5'- uGUGGCGCcGCGCcuuccacuGCCCCCAU--GCGa -3'
miRNA:   3'- -UACCGCGaCGCG--------CGGGGGUGacCGUc -5'
20741 5' -64.7 NC_004688.1 + 72911 0.67 0.357219
Target:  5'- uUGGCGCUGagGcCGCCCCaCACcccgaGGCGc -3'
miRNA:   3'- uACCGCGACg-C-GCGGGG-GUGa----CCGUc -5'
20741 5' -64.7 NC_004688.1 + 58430 0.67 0.341907
Target:  5'- uAUGGgGCgggGaGCGCgCCUACUGGguGa -3'
miRNA:   3'- -UACCgCGa--CgCGCGgGGGUGACCguC- -5'
20741 5' -64.7 NC_004688.1 + 63954 0.67 0.341907
Target:  5'- -cGcCGCUGCcgaacacgaucGCGCCCCCacACUGGcCGGg -3'
miRNA:   3'- uaCcGCGACG-----------CGCGGGGG--UGACC-GUC- -5'
20741 5' -64.7 NC_004688.1 + 2154 0.67 0.325617
Target:  5'- uUGGCGCUGgcgaucuccgcccCGCGCCacaCCCGCUugccgucGGCAa -3'
miRNA:   3'- uACCGCGAC-------------GCGCGG---GGGUGA-------CCGUc -5'
20741 5' -64.7 NC_004688.1 + 39989 0.67 0.319838
Target:  5'- -cGGUGUUGUgGCGUCCgCCGCcgcagUGGCGGg -3'
miRNA:   3'- uaCCGCGACG-CGCGGG-GGUG-----ACCGUC- -5'
20741 5' -64.7 NC_004688.1 + 82572 0.68 0.298856
Target:  5'- -cGGCGUcguagaUGCGCGCCgCCAgCUGGaCGa -3'
miRNA:   3'- uaCCGCG------ACGCGCGGgGGU-GACC-GUc -5'
20741 5' -64.7 NC_004688.1 + 89390 0.68 0.298856
Target:  5'- uGUGGUgcucuaGCUGCGCGCCCUUGCUGu--- -3'
miRNA:   3'- -UACCG------CGACGCGCGGGGGUGACcguc -5'
20741 5' -64.7 NC_004688.1 + 87663 0.69 0.242341
Target:  5'- uUGGgGUUGCGCGCCCgaaCCAC-GGuCGGu -3'
miRNA:   3'- uACCgCGACGCGCGGG---GGUGaCC-GUC- -5'
20741 5' -64.7 NC_004688.1 + 100595 0.7 0.220219
Target:  5'- cUGGCGCUG-GCGCUCaCCGCccUGGgGGg -3'
miRNA:   3'- uACCGCGACgCGCGGG-GGUG--ACCgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.