miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20742 5' -62 NC_004688.1 + 27644 0.67 0.487658
Target:  5'- aGCCgGAUagCGGUCGgGCC-GCCaaacACCu -3'
miRNA:   3'- aCGGgCUAg-GCCAGCgCGGuCGG----UGG- -5'
20742 5' -62 NC_004688.1 + 9609 0.68 0.478392
Target:  5'- cGCgCCGAUCUcGUCGaagGCCAcGCaCGCCg -3'
miRNA:   3'- aCG-GGCUAGGcCAGCg--CGGU-CG-GUGG- -5'
20742 5' -62 NC_004688.1 + 41938 0.68 0.478392
Target:  5'- gGCCUuGUcCCGGUUGC-CCGGCCAg- -3'
miRNA:   3'- aCGGGcUA-GGCCAGCGcGGUCGGUgg -5'
20742 5' -62 NC_004688.1 + 29701 0.68 0.460127
Target:  5'- uUGCCCGG-CUGGggaUCaC-CCGGCCGCCa -3'
miRNA:   3'- -ACGGGCUaGGCC---AGcGcGGUCGGUGG- -5'
20742 5' -62 NC_004688.1 + 20995 0.68 0.460127
Target:  5'- cGUCa-GUCCaGGUCGCGCC-GUCAUCg -3'
miRNA:   3'- aCGGgcUAGG-CCAGCGCGGuCGGUGG- -5'
20742 5' -62 NC_004688.1 + 33090 0.68 0.460127
Target:  5'- aGCCCcacgauGUUCGGggaauggUGCGCCAGCguCCa -3'
miRNA:   3'- aCGGGc-----UAGGCCa------GCGCGGUCGguGG- -5'
20742 5' -62 NC_004688.1 + 35471 0.68 0.460127
Target:  5'- aGCCCGcg-CGGUCccaCGCCA-CCACCg -3'
miRNA:   3'- aCGGGCuagGCCAGc--GCGGUcGGUGG- -5'
20742 5' -62 NC_004688.1 + 94362 0.68 0.442238
Target:  5'- aGCCgGAUCauaccCGCGCCaaucucuugauAGCCACCg -3'
miRNA:   3'- aCGGgCUAGgcca-GCGCGG-----------UCGGUGG- -5'
20742 5' -62 NC_004688.1 + 47931 0.68 0.433442
Target:  5'- --aCCGAU-CGGUgCGCGCCgAGCuCACCc -3'
miRNA:   3'- acgGGCUAgGCCA-GCGCGG-UCG-GUGG- -5'
20742 5' -62 NC_004688.1 + 35624 0.68 0.433442
Target:  5'- aGCCCGggCCGGUgGCcuucaucugGCgAGCaaCGCCg -3'
miRNA:   3'- aCGGGCuaGGCCAgCG---------CGgUCG--GUGG- -5'
20742 5' -62 NC_004688.1 + 58819 0.69 0.382896
Target:  5'- cUGCCuCGucgCCGG-CGCcgggGCCAucGCCACCa -3'
miRNA:   3'- -ACGG-GCua-GGCCaGCG----CGGU--CGGUGG- -5'
20742 5' -62 NC_004688.1 + 64917 0.69 0.382896
Target:  5'- gGCgUCGAggCCGGUCauUGCuCAGCCACCa -3'
miRNA:   3'- aCG-GGCUa-GGCCAGc-GCG-GUCGGUGG- -5'
20742 5' -62 NC_004688.1 + 89804 0.7 0.36694
Target:  5'- cGCCagCGAUgUCGGggcCGCGCCAGCCGg- -3'
miRNA:   3'- aCGG--GCUA-GGCCa--GCGCGGUCGGUgg -5'
20742 5' -62 NC_004688.1 + 100561 0.7 0.359136
Target:  5'- uUGCggCGAUacugCGGcccccCGCGCCGGCCGCCg -3'
miRNA:   3'- -ACGg-GCUAg---GCCa----GCGCGGUCGGUGG- -5'
20742 5' -62 NC_004688.1 + 59310 0.7 0.351448
Target:  5'- cUGCCCGAcgcgaUGGcCGcCGCCGGCUACg -3'
miRNA:   3'- -ACGGGCUag---GCCaGC-GCGGUCGGUGg -5'
20742 5' -62 NC_004688.1 + 91036 0.7 0.329092
Target:  5'- uUG-CCGGUCUGGacgUCGCcCCAcGCCACCa -3'
miRNA:   3'- -ACgGGCUAGGCC---AGCGcGGU-CGGUGG- -5'
20742 5' -62 NC_004688.1 + 53643 0.71 0.321876
Target:  5'- cGCCCaGGcUCCGGcauugaCGuCGCCGGCCugCu -3'
miRNA:   3'- aCGGG-CU-AGGCCa-----GC-GCGGUCGGugG- -5'
20742 5' -62 NC_004688.1 + 56312 0.71 0.31478
Target:  5'- -uCCCGAuaUCCGaGUCGCcggcuuccaGCgCGGCCACCu -3'
miRNA:   3'- acGGGCU--AGGC-CAGCG---------CG-GUCGGUGG- -5'
20742 5' -62 NC_004688.1 + 31256 0.71 0.307803
Target:  5'- cGCgCGuaUCGGcCGCGCCGGCgACCu -3'
miRNA:   3'- aCGgGCuaGGCCaGCGCGGUCGgUGG- -5'
20742 5' -62 NC_004688.1 + 55850 0.71 0.307112
Target:  5'- uUGCCCGAUCCgcagcagucguGGUCgugaucgagguggGCGCC-GCgACCg -3'
miRNA:   3'- -ACGGGCUAGG-----------CCAG-------------CGCGGuCGgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.