miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20743 3' -53.3 NC_004688.1 + 87280 0.66 0.931717
Target:  5'- cAGCGGaUGGauaCGGGAUUGCC-GCCggGCu -3'
miRNA:   3'- -UCGUC-AUC---GUCUUAGCGGaCGGuaCG- -5'
20743 3' -53.3 NC_004688.1 + 7663 0.66 0.926195
Target:  5'- uGCAGUccggguggaucGGCAuGAUCGCCgucgGCCGguucGCc -3'
miRNA:   3'- uCGUCA-----------UCGUcUUAGCGGa---CGGUa---CG- -5'
20743 3' -53.3 NC_004688.1 + 10371 0.66 0.926195
Target:  5'- cGCAGgcgcuccuUGGCcGGcUCGUCgGCCAUGCc -3'
miRNA:   3'- uCGUC--------AUCGuCUuAGCGGaCGGUACG- -5'
20743 3' -53.3 NC_004688.1 + 26012 0.66 0.914352
Target:  5'- cGguGcugAGCGGuc-CGCCUGCCAUa- -3'
miRNA:   3'- uCguCa--UCGUCuuaGCGGACGGUAcg -5'
20743 3' -53.3 NC_004688.1 + 4601 0.66 0.914352
Target:  5'- cGCGGcGGcCAGGucaAUCGCuucCUGCCcgGCa -3'
miRNA:   3'- uCGUCaUC-GUCU---UAGCG---GACGGuaCG- -5'
20743 3' -53.3 NC_004688.1 + 35712 0.67 0.880156
Target:  5'- uGGCuGUGcGCAG---UGCCguUGCCGUGCg -3'
miRNA:   3'- -UCGuCAU-CGUCuuaGCGG--ACGGUACG- -5'
20743 3' -53.3 NC_004688.1 + 80663 0.67 0.880156
Target:  5'- uGGCAuuucGCAGGAccUCaGCCUGCCuuUGCg -3'
miRNA:   3'- -UCGUcau-CGUCUU--AG-CGGACGGu-ACG- -5'
20743 3' -53.3 NC_004688.1 + 5156 0.67 0.872559
Target:  5'- cGCGGUAGCGguagauguucGAAUCGgCCcgGCCcgcauUGCg -3'
miRNA:   3'- uCGUCAUCGU----------CUUAGC-GGa-CGGu----ACG- -5'
20743 3' -53.3 NC_004688.1 + 41973 0.68 0.848351
Target:  5'- uAGUGGUAGCcggcgAGGAUCaGCCccGCCuUGCg -3'
miRNA:   3'- -UCGUCAUCG-----UCUUAG-CGGa-CGGuACG- -5'
20743 3' -53.3 NC_004688.1 + 105283 0.68 0.848351
Target:  5'- uGGCuGUGGUGGcg-CGCgacuacccaaCUGCCGUGCg -3'
miRNA:   3'- -UCGuCAUCGUCuuaGCG----------GACGGUACG- -5'
20743 3' -53.3 NC_004688.1 + 54461 0.68 0.839834
Target:  5'- cAGCgAGgcGCAGGugUGCCggagGUCGUGCg -3'
miRNA:   3'- -UCG-UCauCGUCUuaGCGGa---CGGUACG- -5'
20743 3' -53.3 NC_004688.1 + 7414 0.68 0.839834
Target:  5'- cGCAGgcGUAGAAcgCGCCgagcGUCAUGg -3'
miRNA:   3'- uCGUCauCGUCUUa-GCGGa---CGGUACg -5'
20743 3' -53.3 NC_004688.1 + 49133 0.68 0.822176
Target:  5'- cGCGGccgacgugauuuUGGCGGAucugggCGCCgaggGCUAUGCa -3'
miRNA:   3'- uCGUC------------AUCGUCUua----GCGGa---CGGUACG- -5'
20743 3' -53.3 NC_004688.1 + 23537 0.69 0.784622
Target:  5'- aAGCucGUAGCAGcguUCGCgaGCCcgGUg -3'
miRNA:   3'- -UCGu-CAUCGUCuu-AGCGgaCGGuaCG- -5'
20743 3' -53.3 NC_004688.1 + 60228 0.69 0.784622
Target:  5'- -uCAGUGGUGGAAgcccCGCCcGCgGUGCa -3'
miRNA:   3'- ucGUCAUCGUCUUa---GCGGaCGgUACG- -5'
20743 3' -53.3 NC_004688.1 + 11187 0.69 0.784622
Target:  5'- cGUGGUcGGCAGggUCGggucggucacgaCCggcagGCCGUGCa -3'
miRNA:   3'- uCGUCA-UCGUCuuAGC------------GGa----CGGUACG- -5'
20743 3' -53.3 NC_004688.1 + 17967 0.69 0.764887
Target:  5'- cAGCGucGGCAGGacgaugaaGUCGUggccgCUGCCGUGCa -3'
miRNA:   3'- -UCGUcaUCGUCU--------UAGCG-----GACGGUACG- -5'
20743 3' -53.3 NC_004688.1 + 6193 0.71 0.692236
Target:  5'- cGCGGUAGCGGA--CGCC-GCCgaagGUGUg -3'
miRNA:   3'- uCGUCAUCGUCUuaGCGGaCGG----UACG- -5'
20743 3' -53.3 NC_004688.1 + 104144 0.73 0.552518
Target:  5'- cGCGGUAGCGGAcgcaAUCGUg-GCCAgacUGCa -3'
miRNA:   3'- uCGUCAUCGUCU----UAGCGgaCGGU---ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.