miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20743 5' -53.7 NC_004688.1 + 31104 0.66 0.941758
Target:  5'- cCCACGcgCuGCGCGGUGGgcacccacaUGCCGu -3'
miRNA:   3'- -GGUGCa-GuCGUGCCGCUaaca-----ACGGC- -5'
20743 5' -53.7 NC_004688.1 + 83171 0.66 0.937892
Target:  5'- uCCGCGggCGGUugGGgG--UGUUGCgCGg -3'
miRNA:   3'- -GGUGCa-GUCGugCCgCuaACAACG-GC- -5'
20743 5' -53.7 NC_004688.1 + 13317 0.66 0.932834
Target:  5'- uCCAauuCGUCAGgguCGCGGCGGUaga-GCCGg -3'
miRNA:   3'- -GGU---GCAGUC---GUGCCGCUAacaaCGGC- -5'
20743 5' -53.7 NC_004688.1 + 17682 0.66 0.932834
Target:  5'- uCCACGgguucCGGCGCGGgcCGcUUGgcggGCCGa -3'
miRNA:   3'- -GGUGCa----GUCGUGCC--GCuAACaa--CGGC- -5'
20743 5' -53.7 NC_004688.1 + 109276 0.66 0.927523
Target:  5'- uCUACGUCGGCGCGgGCGGcuacagcGUCGa -3'
miRNA:   3'- -GGUGCAGUCGUGC-CGCUaacaa--CGGC- -5'
20743 5' -53.7 NC_004688.1 + 22924 0.66 0.927523
Target:  5'- -gACGaaCGGCAgauCGGUGAgcaUGUUGCCGa -3'
miRNA:   3'- ggUGCa-GUCGU---GCCGCUa--ACAACGGC- -5'
20743 5' -53.7 NC_004688.1 + 2995 0.67 0.916146
Target:  5'- cCCACGUgAGgAauGCGca-GUUGCCGg -3'
miRNA:   3'- -GGUGCAgUCgUgcCGCuaaCAACGGC- -5'
20743 5' -53.7 NC_004688.1 + 28816 0.67 0.89109
Target:  5'- -gGCGUCAGUGCcGCGAUaaccuuugaauuggcGUUGCCGu -3'
miRNA:   3'- ggUGCAGUCGUGcCGCUAa--------------CAACGGC- -5'
20743 5' -53.7 NC_004688.1 + 61841 0.68 0.883353
Target:  5'- uCCGacCGgUGGCuGCGGCGGUaGUUGCCGc -3'
miRNA:   3'- -GGU--GCaGUCG-UGCCGCUAaCAACGGC- -5'
20743 5' -53.7 NC_004688.1 + 14665 0.68 0.868564
Target:  5'- cCCA-GUCcuCGCGGaCGA-UGUUGCCGa -3'
miRNA:   3'- -GGUgCAGucGUGCC-GCUaACAACGGC- -5'
20743 5' -53.7 NC_004688.1 + 48692 0.68 0.868564
Target:  5'- gCCACGagacccgaUCGGCACGGUGcg---UGCCa -3'
miRNA:   3'- -GGUGC--------AGUCGUGCCGCuaacaACGGc -5'
20743 5' -53.7 NC_004688.1 + 110131 0.68 0.860044
Target:  5'- aCAUGaCAGCACGGCGGUacgacguuaucgcUGaagaUGCCa -3'
miRNA:   3'- gGUGCaGUCGUGCCGCUA-------------ACa---ACGGc -5'
20743 5' -53.7 NC_004688.1 + 24289 0.7 0.772775
Target:  5'- cCCGCGUCAGCA-GGUGccgg--GCCGa -3'
miRNA:   3'- -GGUGCAGUCGUgCCGCuaacaaCGGC- -5'
20743 5' -53.7 NC_004688.1 + 47830 0.7 0.772775
Target:  5'- gCCACGUCgagaaaguugAGCGCGGCuGggUGUucUGCaCGa -3'
miRNA:   3'- -GGUGCAG----------UCGUGCCG-CuaACA--ACG-GC- -5'
20743 5' -53.7 NC_004688.1 + 110692 0.71 0.733327
Target:  5'- gCGCGU-GGCAUGGCGAUUGcgaccGCCu -3'
miRNA:   3'- gGUGCAgUCGUGCCGCUAACaa---CGGc -5'
20743 5' -53.7 NC_004688.1 + 10654 0.72 0.682007
Target:  5'- -gGCgGUCAGCGCGGCG-UUGUccgcgGCCu -3'
miRNA:   3'- ggUG-CAGUCGUGCCGCuAACAa----CGGc -5'
20743 5' -53.7 NC_004688.1 + 75362 0.72 0.671574
Target:  5'- aCAgGgCGGCGcCGGCGAgaaggaUGUUGCCGa -3'
miRNA:   3'- gGUgCaGUCGU-GCCGCUa-----ACAACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.