miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20744 5' -60.2 NC_004688.1 + 85256 0.66 0.624701
Target:  5'- gGCCAGCGCCgccUGguGCucuuucuccUCCGCCUc-- -3'
miRNA:   3'- gUGGUCGCGG---GCguCG---------AGGUGGAaca -5'
20744 5' -60.2 NC_004688.1 + 88317 0.66 0.624701
Target:  5'- gCAUCAGgGCCCGCcGCgcugCCgACCUa-- -3'
miRNA:   3'- -GUGGUCgCGGGCGuCGa---GG-UGGAaca -5'
20744 5' -60.2 NC_004688.1 + 26216 0.66 0.604139
Target:  5'- cCGCCaacAGCGCCUGCcGCagCACCUg-- -3'
miRNA:   3'- -GUGG---UCGCGGGCGuCGagGUGGAaca -5'
20744 5' -60.2 NC_004688.1 + 6699 0.66 0.604139
Target:  5'- aGCC-GCGCcgCCGCGGC-CCACCa--- -3'
miRNA:   3'- gUGGuCGCG--GGCGUCGaGGUGGaaca -5'
20744 5' -60.2 NC_004688.1 + 6200 0.67 0.573471
Target:  5'- -uCCAGCGCgCgGUAGCggacgCCGCCgaaggUGUg -3'
miRNA:   3'- guGGUCGCG-GgCGUCGa----GGUGGa----ACA- -5'
20744 5' -60.2 NC_004688.1 + 32444 0.67 0.563323
Target:  5'- cCACCAgaacGUGCCCGCAGCggcgucuucggUCACCa--- -3'
miRNA:   3'- -GUGGU----CGCGGGCGUCGa----------GGUGGaaca -5'
20744 5' -60.2 NC_004688.1 + 59952 0.67 0.563323
Target:  5'- gACCaAGCGCCCGguuGGCUCCGUCUUc- -3'
miRNA:   3'- gUGG-UCGCGGGCg--UCGAGGUGGAAca -5'
20744 5' -60.2 NC_004688.1 + 21634 0.67 0.54318
Target:  5'- ---gAGCGCCCGCcGC-CgGCCUUGa -3'
miRNA:   3'- guggUCGCGGGCGuCGaGgUGGAACa -5'
20744 5' -60.2 NC_004688.1 + 26332 0.68 0.513433
Target:  5'- uGgCAGCGCCCGCAaggCCACCg--- -3'
miRNA:   3'- gUgGUCGCGGGCGUcgaGGUGGaaca -5'
20744 5' -60.2 NC_004688.1 + 18098 0.68 0.484375
Target:  5'- gACCucaauGgGCCCGCGGCaCCACCa--- -3'
miRNA:   3'- gUGGu----CgCGGGCGUCGaGGUGGaaca -5'
20744 5' -60.2 NC_004688.1 + 61986 0.68 0.465447
Target:  5'- gCGCCGGCGuCCCGCAcg-CCGCCa--- -3'
miRNA:   3'- -GUGGUCGC-GGGCGUcgaGGUGGaaca -5'
20744 5' -60.2 NC_004688.1 + 2220 0.7 0.402446
Target:  5'- uCGCCAGgaagaaucuccCGCUCGC-GCUCCACCUg-- -3'
miRNA:   3'- -GUGGUC-----------GCGGGCGuCGAGGUGGAaca -5'
20744 5' -60.2 NC_004688.1 + 1851 0.72 0.28041
Target:  5'- uGCCAG-GCCCGCGGUUCgCGCCa--- -3'
miRNA:   3'- gUGGUCgCGGGCGUCGAG-GUGGaaca -5'
20744 5' -60.2 NC_004688.1 + 62953 0.73 0.266768
Target:  5'- uCACCGcGUGCuCCGCGGUugagguaUCCACCUUGc -3'
miRNA:   3'- -GUGGU-CGCG-GGCGUCG-------AGGUGGAACa -5'
20744 5' -60.2 NC_004688.1 + 24195 0.75 0.180335
Target:  5'- uGCCGGUGCCCGgGGCcCCGCCcgUGg -3'
miRNA:   3'- gUGGUCGCGGGCgUCGaGGUGGa-ACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.