Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20745 | 3' | -58.8 | NC_004688.1 | + | 39885 | 0.65 | 0.710526 |
Target: 5'- uAGGUccagucgGCgCCU-GCUCCGCcGGGUC-Cg -3' miRNA: 3'- -UCCA-------CGaGGAaCGAGGCGuCCCAGuG- -5' |
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20745 | 3' | -58.8 | NC_004688.1 | + | 87737 | 0.66 | 0.701373 |
Target: 5'- uGGUGCcCCUcauUGUUCCGaaguGGGGgCGCg -3' miRNA: 3'- uCCACGaGGA---ACGAGGCg---UCCCaGUG- -5' |
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20745 | 3' | -58.8 | NC_004688.1 | + | 13252 | 0.66 | 0.670548 |
Target: 5'- cGGGaGgaCCUUGCUauccaCGUAGGGUC-Cg -3' miRNA: 3'- -UCCaCgaGGAACGAg----GCGUCCCAGuG- -5' |
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20745 | 3' | -58.8 | NC_004688.1 | + | 100436 | 0.67 | 0.649822 |
Target: 5'- gAGGcGCUCCgcaagacGCUCCGCAagaaucgacGGG-CGCu -3' miRNA: 3'- -UCCaCGAGGaa-----CGAGGCGU---------CCCaGUG- -5' |
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20745 | 3' | -58.8 | NC_004688.1 | + | 106085 | 0.67 | 0.649822 |
Target: 5'- aAGaUGCUCCggucgaGgUCCGCAGGGaaaUCGCc -3' miRNA: 3'- -UCcACGAGGaa----CgAGGCGUCCC---AGUG- -5' |
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20745 | 3' | -58.8 | NC_004688.1 | + | 42024 | 0.67 | 0.646707 |
Target: 5'- cAGGUGCUcgacgaauguccggCCUggGCg--GCGGGGUCGCc -3' miRNA: 3'- -UCCACGA--------------GGAa-CGaggCGUCCCAGUG- -5' |
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20745 | 3' | -58.8 | NC_004688.1 | + | 82622 | 0.67 | 0.639433 |
Target: 5'- ---aGCUaccUCUUGCcCCGCAGGGUCu- -3' miRNA: 3'- uccaCGA---GGAACGaGGCGUCCCAGug -5' |
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20745 | 3' | -58.8 | NC_004688.1 | + | 11197 | 0.7 | 0.449147 |
Target: 5'- cGGUGC-CCagcgUGgUCgGCAGGGUCGg -3' miRNA: 3'- uCCACGaGGa---ACgAGgCGUCCCAGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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