miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20745 5' -56.2 NC_004688.1 + 41798 0.66 0.863446
Target:  5'- aGGUGACCgcGUUGGgGUCcuccgGGAucGGGCu -3'
miRNA:   3'- aCCGCUGGaaCAGCCgCAG-----UCU--CUCG- -5'
20745 5' -56.2 NC_004688.1 + 10259 0.66 0.858791
Target:  5'- cGGUGGCCUUGcggaccgucuugguuUCGGCcucCAGcuugccGGAGCg -3'
miRNA:   3'- aCCGCUGGAAC---------------AGCCGca-GUC------UCUCG- -5'
20745 5' -56.2 NC_004688.1 + 9891 0.66 0.855645
Target:  5'- aGGCGACUUUGaaGaaacccccaGUGcCAGGGGGCa -3'
miRNA:   3'- aCCGCUGGAACagC---------CGCaGUCUCUCG- -5'
20745 5' -56.2 NC_004688.1 + 10069 0.66 0.855645
Target:  5'- gUGGCGAUCgccUGacgcUCGGCcuUCAGGGuGGCg -3'
miRNA:   3'- -ACCGCUGGa--AC----AGCCGc-AGUCUC-UCG- -5'
20745 5' -56.2 NC_004688.1 + 20099 0.66 0.855645
Target:  5'- uUGGCGAaCUUGaauuUCGGgGcCGcGGGAGCu -3'
miRNA:   3'- -ACCGCUgGAAC----AGCCgCaGU-CUCUCG- -5'
20745 5' -56.2 NC_004688.1 + 20464 0.66 0.847635
Target:  5'- gGGCGAUCauggUGUCGGCGacgUCGGuGucGUa -3'
miRNA:   3'- aCCGCUGGa---ACAGCCGC---AGUCuCu-CG- -5'
20745 5' -56.2 NC_004688.1 + 24601 0.66 0.847635
Target:  5'- aUGGCGACUUccaUG-CgGGCGUCGcGAaggucGAGCg -3'
miRNA:   3'- -ACCGCUGGA---ACaG-CCGCAGU-CU-----CUCG- -5'
20745 5' -56.2 NC_004688.1 + 42665 0.66 0.831016
Target:  5'- uUGuCGcCCUUGUCGGCcUCGcguuuaacGAGGGCg -3'
miRNA:   3'- -ACcGCuGGAACAGCCGcAGU--------CUCUCG- -5'
20745 5' -56.2 NC_004688.1 + 87160 0.67 0.813648
Target:  5'- gUGGCGGgCUggaa--CGUCAGAGAGCc -3'
miRNA:   3'- -ACCGCUgGAacagccGCAGUCUCUCG- -5'
20745 5' -56.2 NC_004688.1 + 84465 0.67 0.776939
Target:  5'- cGGCG-UCguaggUGUaaucCGGCGUCGG-GAGCc -3'
miRNA:   3'- aCCGCuGGa----ACA----GCCGCAGUCuCUCG- -5'
20745 5' -56.2 NC_004688.1 + 37462 0.69 0.707912
Target:  5'- aGGCGACUaUGcggGGCGUCAcgGAGAuGCu -3'
miRNA:   3'- aCCGCUGGaACag-CCGCAGU--CUCU-CG- -5'
20745 5' -56.2 NC_004688.1 + 9526 0.69 0.707912
Target:  5'- cGGCGACaaUGUCGGCa--AGAGccuuGGCg -3'
miRNA:   3'- aCCGCUGgaACAGCCGcagUCUC----UCG- -5'
20745 5' -56.2 NC_004688.1 + 12849 0.69 0.697708
Target:  5'- gGGUGGCCUUGUCGGUGcCGugccucAGCc -3'
miRNA:   3'- aCCGCUGGAACAGCCGCaGUcuc---UCG- -5'
20745 5' -56.2 NC_004688.1 + 17191 0.69 0.687447
Target:  5'- cGGCGACgugCUUGUCGGUuUCGGcuaGGCg -3'
miRNA:   3'- aCCGCUG---GAACAGCCGcAGUCuc-UCG- -5'
20745 5' -56.2 NC_004688.1 + 22581 0.69 0.670934
Target:  5'- aGGuCGGCCUUGcCGGCGgcaaccugcuuaucCAGGGcGCg -3'
miRNA:   3'- aCC-GCUGGAACaGCCGCa-------------GUCUCuCG- -5'
20745 5' -56.2 NC_004688.1 + 20236 0.7 0.635613
Target:  5'- cGGUGaugauuGCCUUG-CGGacaGUCAGGGGGUu -3'
miRNA:   3'- aCCGC------UGGAACaGCCg--CAGUCUCUCG- -5'
20745 5' -56.2 NC_004688.1 + 74816 0.71 0.580602
Target:  5'- cUGGaCGACCUguacccagccgaucUGUCGGCGgguGGGGGUu -3'
miRNA:   3'- -ACC-GCUGGA--------------ACAGCCGCaguCUCUCG- -5'
20745 5' -56.2 NC_004688.1 + 85106 0.71 0.552919
Target:  5'- cGGCGGauucgaugUCUUGcucuUCGGCGUCGaGGAGCu -3'
miRNA:   3'- aCCGCU--------GGAAC----AGCCGCAGUcUCUCG- -5'
20745 5' -56.2 NC_004688.1 + 7441 0.72 0.53267
Target:  5'- aGGCGACggUGUCGGCGagaAGGGugacGCa -3'
miRNA:   3'- aCCGCUGgaACAGCCGCag-UCUCu---CG- -5'
20745 5' -56.2 NC_004688.1 + 24771 0.72 0.522645
Target:  5'- cGGCGccaAgCUUGUUGGCGUCGGAcauGCc -3'
miRNA:   3'- aCCGC---UgGAACAGCCGCAGUCUcu-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.