miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20746 5' -56.2 NC_004688.1 + 41977 0.66 0.862159
Target:  5'- gACgUaGUGGUAGCcggcgaGGAUCaGcCCCGCCu -3'
miRNA:   3'- -UGgAaCACCAUCG------CUUAGgC-GGGCGG- -5'
20746 5' -56.2 NC_004688.1 + 60409 0.68 0.756036
Target:  5'- cGCCa---GGUAGCaGGUCCaGCCCGCg -3'
miRNA:   3'- -UGGaacaCCAUCGcUUAGG-CGGGCGg -5'
20746 5' -56.2 NC_004688.1 + 1828 0.68 0.756036
Target:  5'- aGCUUgGUGGcggcGGCGAAggccUCC-CCCGCCu -3'
miRNA:   3'- -UGGAaCACCa---UCGCUU----AGGcGGGCGG- -5'
20746 5' -56.2 NC_004688.1 + 20401 0.68 0.746235
Target:  5'- cGCCgagGUGGUAGaagcCGAggCCGUuaUCGCCa -3'
miRNA:   3'- -UGGaa-CACCAUC----GCUuaGGCG--GGCGG- -5'
20746 5' -56.2 NC_004688.1 + 10049 0.68 0.736329
Target:  5'- gGCCUUcagGGUGGCGA--CUGCuucaaCCGCCg -3'
miRNA:   3'- -UGGAAca-CCAUCGCUuaGGCG-----GGCGG- -5'
20746 5' -56.2 NC_004688.1 + 13899 0.69 0.70609
Target:  5'- uGCCgcacagcGUGGcGGCGAAagccUCCGCCaagGCCu -3'
miRNA:   3'- -UGGaa-----CACCaUCGCUU----AGGCGGg--CGG- -5'
20746 5' -56.2 NC_004688.1 + 55037 0.69 0.685591
Target:  5'- gGCCcgcaaGUGGUcgGGUGAGagcaguguUCCGcCCCGCCu -3'
miRNA:   3'- -UGGaa---CACCA--UCGCUU--------AGGC-GGGCGG- -5'
20746 5' -56.2 NC_004688.1 + 68610 0.69 0.675267
Target:  5'- cCCUUGUagGGUGGaGAccgucAUUCGCCCGCg -3'
miRNA:   3'- uGGAACA--CCAUCgCU-----UAGGCGGGCGg -5'
20746 5' -56.2 NC_004688.1 + 49163 0.7 0.644114
Target:  5'- cGCCggGUGG-AGUGAugagGUgCGCCgCGCCg -3'
miRNA:   3'- -UGGaaCACCaUCGCU----UAgGCGG-GCGG- -5'
20746 5' -56.2 NC_004688.1 + 11859 0.71 0.581763
Target:  5'- cACCccGUGGagUAGCGAcagAUCUucggggGCCCGCCa -3'
miRNA:   3'- -UGGaaCACC--AUCGCU---UAGG------CGGGCGG- -5'
20746 5' -56.2 NC_004688.1 + 53663 0.71 0.571458
Target:  5'- uCCUUcUGGgccuGCGggUCCGCCCagGCUc -3'
miRNA:   3'- uGGAAcACCau--CGCuuAGGCGGG--CGG- -5'
20746 5' -56.2 NC_004688.1 + 26027 0.72 0.504859
Target:  5'- gGCCc-GUGGgcauaccggugcugAGCG-GUCCGCCUGCCa -3'
miRNA:   3'- -UGGaaCACCa-------------UCGCuUAGGCGGGCGG- -5'
20746 5' -56.2 NC_004688.1 + 58390 0.72 0.500924
Target:  5'- cACCgcggUGUGGcUGGCGGGcUUCGCCCuggcgGCCg -3'
miRNA:   3'- -UGGa---ACACC-AUCGCUU-AGGCGGG-----CGG- -5'
20746 5' -56.2 NC_004688.1 + 24264 0.72 0.481455
Target:  5'- uGCCc-GUGGUAGCGcugCgGCCCGCg -3'
miRNA:   3'- -UGGaaCACCAUCGCuuaGgCGGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.