miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20747 3' -57.1 NC_004688.1 + 28829 0.66 0.802867
Target:  5'- cCAGCGCCu-CAUGGGCGUCa----- -3'
miRNA:   3'- aGUCGCGGucGUACUCGCAGcccuug -5'
20747 3' -57.1 NC_004688.1 + 41130 0.66 0.784348
Target:  5'- -uGGCGCC-GCc-GAaUGUCGGGAACa -3'
miRNA:   3'- agUCGCGGuCGuaCUcGCAGCCCUUG- -5'
20747 3' -57.1 NC_004688.1 + 92900 0.66 0.784348
Target:  5'- aUCAGaaaucccgaCGCCAGCGgagaaauccaccUGGGCGUUGcGGggUu -3'
miRNA:   3'- -AGUC---------GCGGUCGU------------ACUCGCAGC-CCuuG- -5'
20747 3' -57.1 NC_004688.1 + 36276 0.66 0.765258
Target:  5'- aCuGCGC--GCGc-GGCGUCGGGAACa -3'
miRNA:   3'- aGuCGCGguCGUacUCGCAGCCCUUG- -5'
20747 3' -57.1 NC_004688.1 + 43953 0.66 0.765258
Target:  5'- -gGGCGCauCGGCAUGAcgGCGgCGGGGu- -3'
miRNA:   3'- agUCGCG--GUCGUACU--CGCaGCCCUug -5'
20747 3' -57.1 NC_004688.1 + 11198 0.67 0.745674
Target:  5'- cCGGUGcCCAGCGUGgucggcAGgGUCGGGu-- -3'
miRNA:   3'- aGUCGC-GGUCGUAC------UCgCAGCCCuug -5'
20747 3' -57.1 NC_004688.1 + 6869 0.67 0.695067
Target:  5'- aCAGCGCgGGUgAUGgcAGCGUUcaGGGAAUg -3'
miRNA:   3'- aGUCGCGgUCG-UAC--UCGCAG--CCCUUG- -5'
20747 3' -57.1 NC_004688.1 + 24772 0.68 0.674371
Target:  5'- cCGGCGCCaAGCuUGuuGGCGUCGGa--- -3'
miRNA:   3'- aGUCGCGG-UCGuAC--UCGCAGCCcuug -5'
20747 3' -57.1 NC_004688.1 + 92065 0.68 0.643079
Target:  5'- cCAGCGCCcauucgugGGCgAUGAgauccGCGcCGGGGGCc -3'
miRNA:   3'- aGUCGCGG--------UCG-UACU-----CGCaGCCCUUG- -5'
20747 3' -57.1 NC_004688.1 + 34950 0.69 0.611705
Target:  5'- cCAGCGCCccGGC---AGCGUCGaGGAAg -3'
miRNA:   3'- aGUCGCGG--UCGuacUCGCAGC-CCUUg -5'
20747 3' -57.1 NC_004688.1 + 34007 0.7 0.51923
Target:  5'- cCAGCuCCAcCAacgugggGGGCGUCGGGGGCg -3'
miRNA:   3'- aGUCGcGGUcGUa------CUCGCAGCCCUUG- -5'
20747 3' -57.1 NC_004688.1 + 84466 0.71 0.509256
Target:  5'- aCGGCGUCguaGGUGUaauccGGCGUCGGGAGCc -3'
miRNA:   3'- aGUCGCGG---UCGUAc----UCGCAGCCCUUG- -5'
20747 3' -57.1 NC_004688.1 + 62902 0.71 0.48858
Target:  5'- gCAGCucGCCcuugugaGGCggGUGGGCGUCGGaGAGCg -3'
miRNA:   3'- aGUCG--CGG-------UCG--UACUCGCAGCC-CUUG- -5'
20747 3' -57.1 NC_004688.1 + 55371 0.72 0.431852
Target:  5'- cUCGGCugGCCgacgaauAGCAaGcGCGUCGGGAACg -3'
miRNA:   3'- -AGUCG--CGG-------UCGUaCuCGCAGCCCUUG- -5'
20747 3' -57.1 NC_004688.1 + 51035 0.73 0.371637
Target:  5'- aCAGCuGCCcGC-UGGGUGUCGGGAu- -3'
miRNA:   3'- aGUCG-CGGuCGuACUCGCAGCCCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.