miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20748 3' -65 NC_004688.1 + 53620 0.68 0.316817
Target:  5'- cGCCGGCC-UGCUUGUcggcccaCCGCuCGGCCGc -3'
miRNA:   3'- -UGGCCGGuGUGGACGa------GGCG-GCCGGU- -5'
20748 3' -65 NC_004688.1 + 14750 0.68 0.292308
Target:  5'- cACCGGUCgccauaucccccgcgACACCcaagaagGCUCCGC-GGCCGg -3'
miRNA:   3'- -UGGCCGG---------------UGUGGa------CGAGGCGgCCGGU- -5'
20748 3' -65 NC_004688.1 + 92976 0.68 0.289678
Target:  5'- uCCGGCgCACACCagcgGCUCUa-CGGCCGc -3'
miRNA:   3'- uGGCCG-GUGUGGa---CGAGGcgGCCGGU- -5'
20748 3' -65 NC_004688.1 + 70233 0.69 0.283185
Target:  5'- aACCuGGCauguCGCCagcGCUCCGCCGGgCGu -3'
miRNA:   3'- -UGG-CCGgu--GUGGa--CGAGGCGGCCgGU- -5'
20748 3' -65 NC_004688.1 + 97403 0.69 0.268072
Target:  5'- -gCGGCC-CACCUGCUgaaucaaguacgaCGCCGGCa- -3'
miRNA:   3'- ugGCCGGuGUGGACGAg------------GCGGCCGgu -5'
20748 3' -65 NC_004688.1 + 43738 0.69 0.252441
Target:  5'- uCgGGCC-UGCCUGCguagcCCGCgGGCCAg -3'
miRNA:   3'- uGgCCGGuGUGGACGa----GGCGgCCGGU- -5'
20748 3' -65 NC_004688.1 + 39053 0.7 0.240935
Target:  5'- cGCCGcCCGCACCUGCaCCGCUcgGGUUAu -3'
miRNA:   3'- -UGGCcGGUGUGGACGaGGCGG--CCGGU- -5'
20748 3' -65 NC_004688.1 + 44255 0.7 0.229869
Target:  5'- uCCGGCCGCaagcagucgggGCCgGCgaugCCGCCGGUg- -3'
miRNA:   3'- uGGCCGGUG-----------UGGaCGa---GGCGGCCGgu -5'
20748 3' -65 NC_004688.1 + 33656 0.72 0.172203
Target:  5'- cGCCGGCCGCGCCgucaccaGgaCCGCCcacGCCGc -3'
miRNA:   3'- -UGGCCGGUGUGGa------CgaGGCGGc--CGGU- -5'
20748 3' -65 NC_004688.1 + 65593 0.72 0.172203
Target:  5'- gGCgGGCCGuacccCGCCUGCcgcaUCC-CCGGCCAg -3'
miRNA:   3'- -UGgCCGGU-----GUGGACG----AGGcGGCCGGU- -5'
20748 3' -65 NC_004688.1 + 2134 0.73 0.1485
Target:  5'- cCCGcGCCACACCcGCUugCCGUCGGCa- -3'
miRNA:   3'- uGGC-CGGUGUGGaCGA--GGCGGCCGgu -5'
20748 3' -65 NC_004688.1 + 58831 0.73 0.134389
Target:  5'- gGCCGGaCACAUCUGCcucgUCGCCGGCg- -3'
miRNA:   3'- -UGGCCgGUGUGGACGa---GGCGGCCGgu -5'
20748 3' -65 NC_004688.1 + 39881 0.74 0.115525
Target:  5'- uCCaGUCgGCGCCUGCUCCGCCGGguCCGg -3'
miRNA:   3'- uGGcCGG-UGUGGACGAGGCGGCC--GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.