Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20751 | 5' | -61.9 | NC_004688.1 | + | 61806 | 0.66 | 0.558086 |
Target: 5'- cUCGUCGGaG-CUGCggGUCCAGCggCCGu -3' miRNA: 3'- cAGCGGCC-CaGGCGa-CAGGUCGa-GGU- -5' |
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20751 | 5' | -61.9 | NC_004688.1 | + | 39864 | 0.66 | 0.538397 |
Target: 5'- -cCGCCGGGUCCGgUGgcgcaggCguGCUUg- -3' miRNA: 3'- caGCGGCCCAGGCgACa------GguCGAGgu -5' |
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20751 | 5' | -61.9 | NC_004688.1 | + | 71156 | 0.67 | 0.518952 |
Target: 5'- -gCGCCGGGggCGC-GUCCAGCcaUUCGg -3' miRNA: 3'- caGCGGCCCagGCGaCAGGUCG--AGGU- -5' |
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20751 | 5' | -61.9 | NC_004688.1 | + | 91855 | 0.67 | 0.509333 |
Target: 5'- uUCGa-GGGUCCGCgauugccaGcCCGGCUCCu -3' miRNA: 3'- cAGCggCCCAGGCGa-------CaGGUCGAGGu -5' |
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20751 | 5' | -61.9 | NC_004688.1 | + | 42930 | 0.68 | 0.426647 |
Target: 5'- -gCGCCGGGUggggaCCGUucUGUCCAGCg--- -3' miRNA: 3'- caGCGGCCCA-----GGCG--ACAGGUCGaggu -5' |
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20751 | 5' | -61.9 | NC_004688.1 | + | 79475 | 0.68 | 0.426647 |
Target: 5'- aUCGCCGcGGUCUcgGCUGauaggCCAcccGCUCCGg -3' miRNA: 3'- cAGCGGC-CCAGG--CGACa----GGU---CGAGGU- -5' |
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20751 | 5' | -61.9 | NC_004688.1 | + | 25422 | 0.74 | 0.191843 |
Target: 5'- -gCGCCGGGgCCGCUGaaUCCAGCUa-- -3' miRNA: 3'- caGCGGCCCaGGCGAC--AGGUCGAggu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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