Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 20752 | 3' | -58.2 | NC_004688.1 | + | 110401 | 0.66 | 0.716651 |
|
Target: 5'- cGCCGaGGCuCGCGCCGUcaaucgCCUGCGc -3' miRNA: 3'- -UGGUgUCG-GUGCGGCAuca---GGACGUu -5' |
|||||||
| 20752 | 3' | -58.2 | NC_004688.1 | + | 52744 | 0.66 | 0.716651 |
|
Target: 5'- cACCAUcGCCGCGCCGa--UCC-GCGAa -3' miRNA: 3'- -UGGUGuCGGUGCGGCaucAGGaCGUU- -5' |
|||||||
| 20752 | 3' | -58.2 | NC_004688.1 | + | 32912 | 0.66 | 0.685759 |
|
Target: 5'- gGCCucCAGCCACGUCGUGacGUUCgacaGCGGg -3' miRNA: 3'- -UGGu-GUCGGUGCGGCAU--CAGGa---CGUU- -5' |
|||||||
| 20752 | 3' | -58.2 | NC_004688.1 | + | 33836 | 0.66 | 0.685759 |
|
Target: 5'- gGCCGCccaugaccuucuGGUCaACGCCGcccacaUAGUCCUGCu- -3' miRNA: 3'- -UGGUG------------UCGG-UGCGGC------AUCAGGACGuu -5' |
|||||||
| 20752 | 3' | -58.2 | NC_004688.1 | + | 28263 | 0.67 | 0.643958 |
|
Target: 5'- uGCCGaAGCCgACGCCGcggUAGUCCUcGCc- -3' miRNA: 3'- -UGGUgUCGG-UGCGGC---AUCAGGA-CGuu -5' |
|||||||
| 20752 | 3' | -58.2 | NC_004688.1 | + | 20889 | 0.67 | 0.61352 |
|
Target: 5'- gACCGCaacGGCCguggGCGCCGUGGcgaacagcggguaacCCUGCAGg -3' miRNA: 3'- -UGGUG---UCGG----UGCGGCAUCa--------------GGACGUU- -5' |
|||||||
| 20752 | 3' | -58.2 | NC_004688.1 | + | 53447 | 0.69 | 0.509631 |
|
Target: 5'- uACCACaugucGGCgACGCCGUgccgccccggGGUCCUGUu- -3' miRNA: 3'- -UGGUG-----UCGgUGCGGCA----------UCAGGACGuu -5' |
|||||||
| 20752 | 3' | -58.2 | NC_004688.1 | + | 1950 | 0.69 | 0.509631 |
|
Target: 5'- gGCCAgAGCCGCgGCCGUAGg---GCAu -3' miRNA: 3'- -UGGUgUCGGUG-CGGCAUCaggaCGUu -5' |
|||||||
| 20752 | 3' | -58.2 | NC_004688.1 | + | 31260 | 0.72 | 0.371507 |
|
Target: 5'- uCCACgcgcguaucGGCCGCGCCGgcGaCCUGCGu -3' miRNA: 3'- uGGUG---------UCGGUGCGGCauCaGGACGUu -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home