miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20753 3' -55.8 NC_004688.1 + 87281 0.66 0.859516
Target:  5'- cCAGCGGAUGgaUACGGgAUUgccgccgggcUCcagGCCCc -3'
miRNA:   3'- -GUCGCCUACg-AUGCCgUGA----------AGa--CGGG- -5'
20753 3' -55.8 NC_004688.1 + 51743 0.66 0.851522
Target:  5'- -uGCGGAgaagGCUGCGGUugUa--GCCg -3'
miRNA:   3'- guCGCCUa---CGAUGCCGugAagaCGGg -5'
20753 3' -55.8 NC_004688.1 + 43468 0.66 0.843318
Target:  5'- aGGaCGG-UGCgggcGCGGCACUUaacccaaGCCCa -3'
miRNA:   3'- gUC-GCCuACGa---UGCCGUGAAga-----CGGG- -5'
20753 3' -55.8 NC_004688.1 + 77129 0.66 0.834912
Target:  5'- cCGGUGGAgGCcccgGCGGCACg---GCCa -3'
miRNA:   3'- -GUCGCCUaCGa---UGCCGUGaagaCGGg -5'
20753 3' -55.8 NC_004688.1 + 106731 0.66 0.834912
Target:  5'- aAGCuaAUGCUGCGGagucgguguCUaUCUGCCCg -3'
miRNA:   3'- gUCGccUACGAUGCCgu-------GA-AGACGGG- -5'
20753 3' -55.8 NC_004688.1 + 90099 0.66 0.826311
Target:  5'- cCAGCGGGUGaggUGGCGCaUC-GCCg -3'
miRNA:   3'- -GUCGCCUACgauGCCGUGaAGaCGGg -5'
20753 3' -55.8 NC_004688.1 + 23980 0.66 0.82544
Target:  5'- cCAGCGccccggaGAUGCccgcccCGGC-CUUCUGCgCCa -3'
miRNA:   3'- -GUCGC-------CUACGau----GCCGuGAAGACG-GG- -5'
20753 3' -55.8 NC_004688.1 + 2381 0.67 0.816634
Target:  5'- uCGGCGGGUcuucGUagauuucgaugucUACGGCGCggCcGCCCu -3'
miRNA:   3'- -GUCGCCUA----CG-------------AUGCCGUGaaGaCGGG- -5'
20753 3' -55.8 NC_004688.1 + 101100 0.67 0.804923
Target:  5'- aGGUGGA-GCUGCgGGCGCUgguggaguccaagCUggaGCCCg -3'
miRNA:   3'- gUCGCCUaCGAUG-CCGUGAa------------GA---CGGG- -5'
20753 3' -55.8 NC_004688.1 + 53007 0.67 0.799422
Target:  5'- aGGCGGA-GCgcaucGCGGUAgUggaaUGCCCg -3'
miRNA:   3'- gUCGCCUaCGa----UGCCGUgAag--ACGGG- -5'
20753 3' -55.8 NC_004688.1 + 2432 0.67 0.790127
Target:  5'- -uGCGGAUGCggcGCGGCAUcacaggGCgCCa -3'
miRNA:   3'- guCGCCUACGa--UGCCGUGaaga--CG-GG- -5'
20753 3' -55.8 NC_004688.1 + 89896 0.67 0.780682
Target:  5'- gGGUGGGUGCgGCGGCucGCcgcCUGgCCg -3'
miRNA:   3'- gUCGCCUACGaUGCCG--UGaa-GACgGG- -5'
20753 3' -55.8 NC_004688.1 + 46388 0.67 0.771096
Target:  5'- gAGCGGcaGUGCUACGGU---UCgGCCg -3'
miRNA:   3'- gUCGCC--UACGAUGCCGugaAGaCGGg -5'
20753 3' -55.8 NC_004688.1 + 92965 0.68 0.761379
Target:  5'- cCAGCGGcucuacgGCcGCGGCGaUUCUGCUUc -3'
miRNA:   3'- -GUCGCCua-----CGaUGCCGUgAAGACGGG- -5'
20753 3' -55.8 NC_004688.1 + 63222 0.69 0.69053
Target:  5'- cCGGaGGAgUGCUGCGGCAg-UCUGUCg -3'
miRNA:   3'- -GUCgCCU-ACGAUGCCGUgaAGACGGg -5'
20753 3' -55.8 NC_004688.1 + 44573 0.69 0.69053
Target:  5'- aCGGCGGGgccgaucgUGUacguccagUGCGGCGcCUUCggGCCCu -3'
miRNA:   3'- -GUCGCCU--------ACG--------AUGCCGU-GAAGa-CGGG- -5'
20753 3' -55.8 NC_004688.1 + 46278 0.69 0.659198
Target:  5'- -uGUGGGuUGCgacgACGGCACggUUGCCUc -3'
miRNA:   3'- guCGCCU-ACGa---UGCCGUGaaGACGGG- -5'
20753 3' -55.8 NC_004688.1 + 58186 0.7 0.596147
Target:  5'- uCGGCuGGUGCUGCuGCACUUCUuCaCCg -3'
miRNA:   3'- -GUCGcCUACGAUGcCGUGAAGAcG-GG- -5'
20753 3' -55.8 NC_004688.1 + 16538 0.71 0.554557
Target:  5'- gCAGCGGGccaagGUUGCGGCgacacccaaaACUUCcucGCCCg -3'
miRNA:   3'- -GUCGCCUa----CGAUGCCG----------UGAAGa--CGGG- -5'
20753 3' -55.8 NC_004688.1 + 74695 0.73 0.445893
Target:  5'- aGGCGGGUGCcguCGGCGCcgaUGCCg -3'
miRNA:   3'- gUCGCCUACGau-GCCGUGaagACGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.