miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20755 3' -52.2 NC_004688.1 + 60907 0.66 0.969882
Target:  5'- aGGGGCCGgccaaUGGUucuUGggGGCGGUGCGGu -3'
miRNA:   3'- -CCUUGGC-----AUCG---ACagUCGUUACGCCc -5'
20755 3' -52.2 NC_004688.1 + 48795 0.66 0.966714
Target:  5'- gGGAGCuCGUgAGcCUGcUCuacgAGCAgaggGUGCGGGg -3'
miRNA:   3'- -CCUUG-GCA-UC-GAC-AG----UCGU----UACGCCC- -5'
20755 3' -52.2 NC_004688.1 + 74800 0.66 0.963317
Target:  5'- -cAGCCGau-CUGUCGGCGG-GUGGGg -3'
miRNA:   3'- ccUUGGCaucGACAGUCGUUaCGCCC- -5'
20755 3' -52.2 NC_004688.1 + 110729 0.67 0.937837
Target:  5'- aGGAuuaGCUGacgugcgGGCUGcUAGCAcUGCGGGc -3'
miRNA:   3'- -CCU---UGGCa------UCGACaGUCGUuACGCCC- -5'
20755 3' -52.2 NC_004688.1 + 28624 0.68 0.927313
Target:  5'- gGGAuguuGCCGUugaacgccaAGCUGaUCAgGCGGUGCaGGa -3'
miRNA:   3'- -CCU----UGGCA---------UCGAC-AGU-CGUUACGcCC- -5'
20755 3' -52.2 NC_004688.1 + 29738 0.68 0.921662
Target:  5'- gGGGACCGUgAGCgggaacaacGcCAGCA--GCGGGu -3'
miRNA:   3'- -CCUUGGCA-UCGa--------CaGUCGUuaCGCCC- -5'
20755 3' -52.2 NC_004688.1 + 46053 0.68 0.915753
Target:  5'- cGGGGCCGUuaugAGgUGUgAcaAGUGCGGGa -3'
miRNA:   3'- -CCUUGGCA----UCgACAgUcgUUACGCCC- -5'
20755 3' -52.2 NC_004688.1 + 97457 0.7 0.848872
Target:  5'- -cAGCCGgcGCUGaucauccagcgucaUCGGCuuGUGCGGGc -3'
miRNA:   3'- ccUUGGCauCGAC--------------AGUCGu-UACGCCC- -5'
20755 3' -52.2 NC_004688.1 + 61839 0.72 0.768772
Target:  5'- -cGACCgGUGGCUG-CGGCGGUaguugccGCGGGg -3'
miRNA:   3'- ccUUGG-CAUCGACaGUCGUUA-------CGCCC- -5'
20755 3' -52.2 NC_004688.1 + 42921 0.72 0.749906
Target:  5'- gGGGACCGUu-CUGUcCAGCGA-GCGGa -3'
miRNA:   3'- -CCUUGGCAucGACA-GUCGUUaCGCCc -5'
20755 3' -52.2 NC_004688.1 + 39818 0.78 0.431353
Target:  5'- cGGuGCCGUGGUUGUC-GCAGUGUuuGGGu -3'
miRNA:   3'- -CCuUGGCAUCGACAGuCGUUACG--CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.