miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20755 5' -53.7 NC_004688.1 + 46323 0.67 0.914213
Target:  5'- -gCCCAcGCUC-CCCGAGaccgccacguUCACGGUCg -3'
miRNA:   3'- gaGGGU-UGAGuGGGUUU----------GGUGCCAGg -5'
20755 5' -53.7 NC_004688.1 + 86805 0.67 0.908058
Target:  5'- -aCCCGGaUCGuCCCGaacggGACCGCcGGUCCc -3'
miRNA:   3'- gaGGGUUgAGU-GGGU-----UUGGUG-CCAGG- -5'
20755 5' -53.7 NC_004688.1 + 67229 0.67 0.908058
Target:  5'- -gCCCAccGCuUCACCCcaaguccGACCACcGUCCu -3'
miRNA:   3'- gaGGGU--UG-AGUGGGu------UUGGUGcCAGG- -5'
20755 5' -53.7 NC_004688.1 + 52146 0.67 0.907428
Target:  5'- -aCCCAACUcCACCCGcuacgagGACgACGaGUUCc -3'
miRNA:   3'- gaGGGUUGA-GUGGGU-------UUGgUGC-CAGG- -5'
20755 5' -53.7 NC_004688.1 + 56021 0.67 0.901653
Target:  5'- uCUCCUguuGC-CGCgCuuGCCGCGGUUCa -3'
miRNA:   3'- -GAGGGu--UGaGUGgGuuUGGUGCCAGG- -5'
20755 5' -53.7 NC_004688.1 + 1205 0.67 0.901653
Target:  5'- gCUCCgGAgUCGCCCAcgggaaGGUCCg -3'
miRNA:   3'- -GAGGgUUgAGUGGGUuuggugCCAGG- -5'
20755 5' -53.7 NC_004688.1 + 34354 0.67 0.901653
Target:  5'- aCUCCCGGCUgGCCgGucuCCgcGCGGgacUCCu -3'
miRNA:   3'- -GAGGGUUGAgUGGgUuu-GG--UGCC---AGG- -5'
20755 5' -53.7 NC_004688.1 + 49817 0.67 0.895002
Target:  5'- -cCCUGAC-CACUgGAGCCAUGGcagUCCg -3'
miRNA:   3'- gaGGGUUGaGUGGgUUUGGUGCC---AGG- -5'
20755 5' -53.7 NC_004688.1 + 89885 0.68 0.880975
Target:  5'- ---gCGGCUCGCCgccuGGCCGgGGUCCg -3'
miRNA:   3'- gaggGUUGAGUGGgu--UUGGUgCCAGG- -5'
20755 5' -53.7 NC_004688.1 + 22888 0.68 0.873608
Target:  5'- -gCCCAGgUCGCC---GCCGCGGcgCCu -3'
miRNA:   3'- gaGGGUUgAGUGGguuUGGUGCCa-GG- -5'
20755 5' -53.7 NC_004688.1 + 27008 0.68 0.858193
Target:  5'- uUCCCucCgugacCCCGGGCCACGGcgCCa -3'
miRNA:   3'- gAGGGuuGagu--GGGUUUGGUGCCa-GG- -5'
20755 5' -53.7 NC_004688.1 + 78847 0.68 0.850158
Target:  5'- -cCCCAGCUgaGCCCuAACCAguCGG-CCg -3'
miRNA:   3'- gaGGGUUGAg-UGGGuUUGGU--GCCaGG- -5'
20755 5' -53.7 NC_004688.1 + 68856 0.69 0.841914
Target:  5'- -gCUCGAUcCGCCCGAACC--GGUCCu -3'
miRNA:   3'- gaGGGUUGaGUGGGUUUGGugCCAGG- -5'
20755 5' -53.7 NC_004688.1 + 67344 0.69 0.833468
Target:  5'- -cCCCAGCUCAUCCAAucggcgUCGUGGUCg -3'
miRNA:   3'- gaGGGUUGAGUGGGUUu-----GGUGCCAGg -5'
20755 5' -53.7 NC_004688.1 + 32545 0.69 0.833468
Target:  5'- aUCgUCAACUgCACCCGGGCCAacaaGGUUUg -3'
miRNA:   3'- gAG-GGUUGA-GUGGGUUUGGUg---CCAGG- -5'
20755 5' -53.7 NC_004688.1 + 73563 0.69 0.816003
Target:  5'- aUCUCGuuCUCuuCCCAGGCCAgggGGUCCg -3'
miRNA:   3'- gAGGGUu-GAGu-GGGUUUGGUg--CCAGG- -5'
20755 5' -53.7 NC_004688.1 + 68552 0.69 0.807001
Target:  5'- gCUCCggCAGCUucCGCCCccGCUucGCGGUCCu -3'
miRNA:   3'- -GAGG--GUUGA--GUGGGuuUGG--UGCCAGG- -5'
20755 5' -53.7 NC_004688.1 + 18283 0.7 0.788503
Target:  5'- uUCUUGGCgauGCCCcAGCUGCGGUCCa -3'
miRNA:   3'- gAGGGUUGag-UGGGuUUGGUGCCAGG- -5'
20755 5' -53.7 NC_004688.1 + 17356 0.7 0.788503
Target:  5'- aUCUCcGCUCGCCCu--CCACGGg-- -3'
miRNA:   3'- gAGGGuUGAGUGGGuuuGGUGCCagg -5'
20755 5' -53.7 NC_004688.1 + 64628 0.7 0.76941
Target:  5'- -gCCCGGCUCcaugacauuCCCGAGCCACGa-CCa -3'
miRNA:   3'- gaGGGUUGAGu--------GGGUUUGGUGCcaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.