miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20756 5' -56.8 NC_004688.1 + 55842 0.66 0.831608
Target:  5'- uCCgCAGCagUCGUggUCGUGAUCGagguggGCGCc -3'
miRNA:   3'- -GG-GUCG--AGCGuuGGCGCUGGCa-----UGCG- -5'
20756 5' -56.8 NC_004688.1 + 102276 0.66 0.831608
Target:  5'- aCCCAGCUUgGCuauGCCGa-AUgGUugGCg -3'
miRNA:   3'- -GGGUCGAG-CGu--UGGCgcUGgCAugCG- -5'
20756 5' -56.8 NC_004688.1 + 5963 0.66 0.829096
Target:  5'- gCCCGucgaggaucucgauGCUCu---CCGCG-CCGUGCGCc -3'
miRNA:   3'- -GGGU--------------CGAGcguuGGCGCuGGCAUGCG- -5'
20756 5' -56.8 NC_004688.1 + 109808 0.66 0.823171
Target:  5'- gCCAGCUC-UAGCgGaCGACCGagggAUGCc -3'
miRNA:   3'- gGGUCGAGcGUUGgC-GCUGGCa---UGCG- -5'
20756 5' -56.8 NC_004688.1 + 6703 0.66 0.823171
Target:  5'- cCUCAGCcgCGCcGCCGCGGCCc----- -3'
miRNA:   3'- -GGGUCGa-GCGuUGGCGCUGGcaugcg -5'
20756 5' -56.8 NC_004688.1 + 38258 0.66 0.820606
Target:  5'- gCCAGCuucgauuUCGCAaucGCCGCG-CCGguauugaucuuCGCg -3'
miRNA:   3'- gGGUCG-------AGCGU---UGGCGCuGGCau---------GCG- -5'
20756 5' -56.8 NC_004688.1 + 31407 0.67 0.81456
Target:  5'- -gCAGCaUUGC--CCGCGgacACCGUugGCa -3'
miRNA:   3'- ggGUCG-AGCGuuGGCGC---UGGCAugCG- -5'
20756 5' -56.8 NC_004688.1 + 44354 0.67 0.805784
Target:  5'- aCCCagGGUUCGgcacCGACCGgGGCCGcaGCGUa -3'
miRNA:   3'- -GGG--UCGAGC----GUUGGCgCUGGCa-UGCG- -5'
20756 5' -56.8 NC_004688.1 + 70232 0.67 0.805784
Target:  5'- aCCUGGCaugUCGCcagcgcuCCGcCGGgCGUGCGCu -3'
miRNA:   3'- -GGGUCG---AGCGuu-----GGC-GCUgGCAUGCG- -5'
20756 5' -56.8 NC_004688.1 + 59985 0.67 0.805784
Target:  5'- gCCAGCUCggcccgaggguGCcACCGCG-CCGgcgaccaaGCGCc -3'
miRNA:   3'- gGGUCGAG-----------CGuUGGCGCuGGCa-------UGCG- -5'
20756 5' -56.8 NC_004688.1 + 52266 0.67 0.805784
Target:  5'- cCUCAGCcggUCGUAcuACCG-GAUCGUugGUa -3'
miRNA:   3'- -GGGUCG---AGCGU--UGGCgCUGGCAugCG- -5'
20756 5' -56.8 NC_004688.1 + 48975 0.67 0.805784
Target:  5'- gCCCAGCUCGUGgagauGCUcgGCGucgacguggacACCGUcaaACGCu -3'
miRNA:   3'- -GGGUCGAGCGU-----UGG--CGC-----------UGGCA---UGCG- -5'
20756 5' -56.8 NC_004688.1 + 17963 0.67 0.805784
Target:  5'- gUCGGCaggacgaugaagUCGUGGCCGCuGCCGUGCa- -3'
miRNA:   3'- gGGUCG------------AGCGUUGGCGcUGGCAUGcg -5'
20756 5' -56.8 NC_004688.1 + 44181 0.67 0.79685
Target:  5'- aCCCAGUUCGUu------GCCGUACGCa -3'
miRNA:   3'- -GGGUCGAGCGuuggcgcUGGCAUGCG- -5'
20756 5' -56.8 NC_004688.1 + 75834 0.67 0.79685
Target:  5'- gCCUcgAGUUUGuCGGCCGCGGCCucguCGCc -3'
miRNA:   3'- -GGG--UCGAGC-GUUGGCGCUGGcau-GCG- -5'
20756 5' -56.8 NC_004688.1 + 63206 0.67 0.79685
Target:  5'- -gCAGUcugUCGCcACCGCGACUGguccgGgGCg -3'
miRNA:   3'- ggGUCG---AGCGuUGGCGCUGGCa----UgCG- -5'
20756 5' -56.8 NC_004688.1 + 33139 0.67 0.778544
Target:  5'- aUCCAGCUCGUAGgagaugaacuccCCGgGGgcgcCCGUGcCGCc -3'
miRNA:   3'- -GGGUCGAGCGUU------------GGCgCU----GGCAU-GCG- -5'
20756 5' -56.8 NC_004688.1 + 44256 0.67 0.778544
Target:  5'- uUCCGGC-CGCAAgcagUCGgGGCCGgcgAUGCc -3'
miRNA:   3'- -GGGUCGaGCGUU----GGCgCUGGCa--UGCG- -5'
20756 5' -56.8 NC_004688.1 + 89803 0.67 0.778544
Target:  5'- gCCAGCgaugUCGgGGCCGCGccaGCCGggAgGCu -3'
miRNA:   3'- gGGUCG----AGCgUUGGCGC---UGGCa-UgCG- -5'
20756 5' -56.8 NC_004688.1 + 47017 0.67 0.778544
Target:  5'- gUCGGCUCGCAAgauCCGCGggGCaa-GCGCu -3'
miRNA:   3'- gGGUCGAGCGUU---GGCGC--UGgcaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.