miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20757 3' -53.8 NC_004688.1 + 20422 0.66 0.91197
Target:  5'- --cCGUgCCGUCCucGUgcagGGCGCCGAg -3'
miRNA:   3'- uuaGCAaGGCGGGu-UAa---CCGUGGCUg -5'
20757 3' -53.8 NC_004688.1 + 34422 0.66 0.91197
Target:  5'- --cCGUgCCGCCCAcggUGGUGCCa-- -3'
miRNA:   3'- uuaGCAaGGCGGGUua-ACCGUGGcug -5'
20757 3' -53.8 NC_004688.1 + 109438 0.66 0.905597
Target:  5'- aGGUCGgcUCGCCCGug-GGCGUCGAUc -3'
miRNA:   3'- -UUAGCaaGGCGGGUuaaCCGUGGCUG- -5'
20757 3' -53.8 NC_004688.1 + 44563 0.66 0.898966
Target:  5'- cGAUCGUguaCGUCCAGUgcGGCGCCu-- -3'
miRNA:   3'- -UUAGCAag-GCGGGUUAa-CCGUGGcug -5'
20757 3' -53.8 NC_004688.1 + 38320 0.66 0.898966
Target:  5'- --aCGcgCUGCCgGAUUucuGCACCGACg -3'
miRNA:   3'- uuaGCaaGGCGGgUUAAc--CGUGGCUG- -5'
20757 3' -53.8 NC_004688.1 + 895 0.67 0.884943
Target:  5'- uGAUCGUUCCuGCCgCugcc-GCGCUGACg -3'
miRNA:   3'- -UUAGCAAGG-CGG-GuuaacCGUGGCUG- -5'
20757 3' -53.8 NC_004688.1 + 72924 0.67 0.884943
Target:  5'- -cUUGUUUCGUUC-AUUGGCGCUGAg -3'
miRNA:   3'- uuAGCAAGGCGGGuUAACCGUGGCUg -5'
20757 3' -53.8 NC_004688.1 + 68579 0.67 0.869936
Target:  5'- cGAUCGUUCUcagcgcuuGCUCuagUGGCuCCGGCa -3'
miRNA:   3'- -UUAGCAAGG--------CGGGuuaACCGuGGCUG- -5'
20757 3' -53.8 NC_004688.1 + 33350 0.67 0.85399
Target:  5'- --aCGgcacaUCGCCCGAgcgGGuCACCGACg -3'
miRNA:   3'- uuaGCaa---GGCGGGUUaa-CC-GUGGCUG- -5'
20757 3' -53.8 NC_004688.1 + 16564 0.67 0.85399
Target:  5'- -uUCGggCCGCCCc---GGCACCa-- -3'
miRNA:   3'- uuAGCaaGGCGGGuuaaCCGUGGcug -5'
20757 3' -53.8 NC_004688.1 + 9928 0.68 0.828433
Target:  5'- uAAUUGaUCCGCCCAGUgccagGGCGuuG-Cg -3'
miRNA:   3'- -UUAGCaAGGCGGGUUAa----CCGUggCuG- -5'
20757 3' -53.8 NC_004688.1 + 54497 0.68 0.81951
Target:  5'- --cUGgaCCGCCUugacGUUGGCGCCGGa -3'
miRNA:   3'- uuaGCaaGGCGGGu---UAACCGUGGCUg -5'
20757 3' -53.8 NC_004688.1 + 96818 0.68 0.81951
Target:  5'- --gCGUUCUGCCCGugGUUcGGCGCCc-- -3'
miRNA:   3'- uuaGCAAGGCGGGU--UAA-CCGUGGcug -5'
20757 3' -53.8 NC_004688.1 + 93236 0.69 0.791653
Target:  5'- --gUGaUgCGCCCGug-GGCACCGACc -3'
miRNA:   3'- uuaGCaAgGCGGGUuaaCCGUGGCUG- -5'
20757 3' -53.8 NC_004688.1 + 53650 0.72 0.604492
Target:  5'- --gCGggUCCGCCCAGgcuccGGCAUUGACg -3'
miRNA:   3'- uuaGCa-AGGCGGGUUaa---CCGUGGCUG- -5'
20757 3' -53.8 NC_004688.1 + 50067 0.72 0.593798
Target:  5'- uGUCGUUCgCGCCUgcgucGAUgUGGCGCCGGa -3'
miRNA:   3'- uUAGCAAG-GCGGG-----UUA-ACCGUGGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.