miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20757 5' -50.2 NC_004688.1 + 16953 0.66 0.99393
Target:  5'- gCCuguUCGggGCCGcUGGCGGGCuUCa- -3'
miRNA:   3'- -GGu--AGCuaUGGCaACCGCUUGcAGac -5'
20757 5' -50.2 NC_004688.1 + 19663 0.66 0.99393
Target:  5'- cCCGggcccCGGUGCCGcagaUGGCGGcACGaCUGg -3'
miRNA:   3'- -GGUa----GCUAUGGCa---ACCGCU-UGCaGAC- -5'
20757 5' -50.2 NC_004688.1 + 104106 0.66 0.99393
Target:  5'- gCAUUGGUGCCcgcGGCGAG-GUCUa -3'
miRNA:   3'- gGUAGCUAUGGcaaCCGCUUgCAGAc -5'
20757 5' -50.2 NC_004688.1 + 91645 0.66 0.989359
Target:  5'- cCCGUgCGAggauuccgGCCGgaggGGCGgAACGUCg- -3'
miRNA:   3'- -GGUA-GCUa-------UGGCaa--CCGC-UUGCAGac -5'
20757 5' -50.2 NC_004688.1 + 93709 0.66 0.989359
Target:  5'- gCCAUCGGUACCcUcgcuccacucUGGCGGGacUCUGu -3'
miRNA:   3'- -GGUAGCUAUGGcA----------ACCGCUUgcAGAC- -5'
20757 5' -50.2 NC_004688.1 + 31251 0.67 0.98624
Target:  5'- gUAUCG--GCCGcgccGGCGAccuGCGUCUGa -3'
miRNA:   3'- gGUAGCuaUGGCaa--CCGCU---UGCAGAC- -5'
20757 5' -50.2 NC_004688.1 + 43843 0.67 0.982464
Target:  5'- aCCGUcCGGcaccccagUGCCGUUGGCGGugauuauCGUCc- -3'
miRNA:   3'- -GGUA-GCU--------AUGGCAACCGCUu------GCAGac -5'
20757 5' -50.2 NC_004688.1 + 25805 0.67 0.982464
Target:  5'- -gGUCGAUGCCGccaccccgGGCGAA-GUCg- -3'
miRNA:   3'- ggUAGCUAUGGCaa------CCGCUUgCAGac -5'
20757 5' -50.2 NC_004688.1 + 97208 0.67 0.982464
Target:  5'- --uUUGAUGCCGUUGGUcu-CGUCg- -3'
miRNA:   3'- gguAGCUAUGGCAACCGcuuGCAGac -5'
20757 5' -50.2 NC_004688.1 + 65388 0.67 0.980307
Target:  5'- cCCAgUCGAUGCCGgcuucGGUGccGugGUCUa -3'
miRNA:   3'- -GGU-AGCUAUGGCaa---CCGC--UugCAGAc -5'
20757 5' -50.2 NC_004688.1 + 103662 0.68 0.972647
Target:  5'- gCCggCGGcucUGCCGagcucgUGGUGAGCGUCa- -3'
miRNA:   3'- -GGuaGCU---AUGGCa-----ACCGCUUGCAGac -5'
20757 5' -50.2 NC_004688.1 + 40743 0.68 0.96967
Target:  5'- gCCAUCGGUGgaGg-GGCGGGCcUCUGa -3'
miRNA:   3'- -GGUAGCUAUggCaaCCGCUUGcAGAC- -5'
20757 5' -50.2 NC_004688.1 + 108028 0.69 0.959368
Target:  5'- aCGUCGA-ACaCGUgcgGGCGGAacUGUCUGa -3'
miRNA:   3'- gGUAGCUaUG-GCAa--CCGCUU--GCAGAC- -5'
20757 5' -50.2 NC_004688.1 + 59365 0.69 0.955455
Target:  5'- cCCGUCG--GCCGacaaggUGGUGAACuUCUGg -3'
miRNA:   3'- -GGUAGCuaUGGCa-----ACCGCUUGcAGAC- -5'
20757 5' -50.2 NC_004688.1 + 101939 0.73 0.815093
Target:  5'- aCCAUCGGUGCCGUgauacgccGGCGcAACGg--- -3'
miRNA:   3'- -GGUAGCUAUGGCAa-------CCGC-UUGCagac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.