Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20758 | 3' | -48.2 | NC_004688.1 | + | 5601 | 0.66 | 0.996856 |
Target: 5'- uGCGaCGUGAAGAAGGacuuguaccccaGCGAgCGGGCu -3' miRNA: 3'- uUGC-GUAUUUUUUCC------------CGUUgGCCUGu -5' |
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20758 | 3' | -48.2 | NC_004688.1 | + | 108770 | 0.66 | 0.996856 |
Target: 5'- cGCGCGgaacuuUGGGAcAGGGCAGacaUGGACGu -3' miRNA: 3'- uUGCGU------AUUUUuUCCCGUUg--GCCUGU- -5' |
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20758 | 3' | -48.2 | NC_004688.1 | + | 102017 | 0.66 | 0.996261 |
Target: 5'- gAACGCuguggGUGAGAuugccaAAGGGCAGuuGGAa- -3' miRNA: 3'- -UUGCG-----UAUUUU------UUCCCGUUggCCUgu -5' |
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20758 | 3' | -48.2 | NC_004688.1 | + | 43541 | 0.66 | 0.994794 |
Target: 5'- cAGCGCc---GAGGGGGUcGCCGcGACGg -3' miRNA: 3'- -UUGCGuauuUUUUCCCGuUGGC-CUGU- -5' |
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20758 | 3' | -48.2 | NC_004688.1 | + | 858 | 0.67 | 0.992785 |
Target: 5'- -cCGCGUGGAGcAGgcgguguGGCAGCgGGACGg -3' miRNA: 3'- uuGCGUAUUUUuUC-------CCGUUGgCCUGU- -5' |
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20758 | 3' | -48.2 | NC_004688.1 | + | 13234 | 0.67 | 0.991754 |
Target: 5'- cACGUAggguccGGGGUAuCCGGGCAg -3' miRNA: 3'- uUGCGUauuuuuUCCCGUuGGCCUGU- -5' |
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20758 | 3' | -48.2 | NC_004688.1 | + | 49078 | 0.67 | 0.991754 |
Target: 5'- -cCGCc-AAAGGAGGGCucCCGGugAg -3' miRNA: 3'- uuGCGuaUUUUUUCCCGuuGGCCugU- -5' |
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20758 | 3' | -48.2 | NC_004688.1 | + | 1751 | 0.67 | 0.990475 |
Target: 5'- cAGCGCAUAGGcGAGGGCGG-CGuACGu -3' miRNA: 3'- -UUGCGUAUUUuUUCCCGUUgGCcUGU- -5' |
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20758 | 3' | -48.2 | NC_004688.1 | + | 23035 | 0.67 | 0.989044 |
Target: 5'- gAugGCcgGGGuGAGGGCAaggcucugagagGCCGuGACAa -3' miRNA: 3'- -UugCGuaUUUuUUCCCGU------------UGGC-CUGU- -5' |
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20758 | 3' | -48.2 | NC_004688.1 | + | 3702 | 0.68 | 0.983739 |
Target: 5'- aGGCgGCAUGcAAAA-GGCGAUCGGGCGg -3' miRNA: 3'- -UUG-CGUAUuUUUUcCCGUUGGCCUGU- -5' |
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20758 | 3' | -48.2 | NC_004688.1 | + | 80089 | 0.68 | 0.983739 |
Target: 5'- cAGCGCAUGGccauAGGGGCAuUCGGuGCGc -3' miRNA: 3'- -UUGCGUAUUuu--UUCCCGUuGGCC-UGU- -5' |
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20758 | 3' | -48.2 | NC_004688.1 | + | 56822 | 0.69 | 0.976684 |
Target: 5'- cGGCaGCAUGAGuagcGGGGCcaacGAUCGGACGa -3' miRNA: 3'- -UUG-CGUAUUUuu--UCCCG----UUGGCCUGU- -5' |
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20758 | 3' | -48.2 | NC_004688.1 | + | 75890 | 0.69 | 0.970873 |
Target: 5'- -uCGCGUAccAGAGGGCGG-CGGGCc -3' miRNA: 3'- uuGCGUAUuuUUUCCCGUUgGCCUGu -5' |
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20758 | 3' | -48.2 | NC_004688.1 | + | 23175 | 0.7 | 0.956686 |
Target: 5'- cAGCGCcgccugcuGGGCGGCCGGAgAg -3' miRNA: 3'- -UUGCGuauuuuuuCCCGUUGGCCUgU- -5' |
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20758 | 3' | -48.2 | NC_004688.1 | + | 15196 | 0.7 | 0.95627 |
Target: 5'- cGGCaCAUGAAAGguguccAGGGCAACUGGAa- -3' miRNA: 3'- -UUGcGUAUUUUU------UCCCGUUGGCCUgu -5' |
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20758 | 3' | -48.2 | NC_004688.1 | + | 18737 | 0.7 | 0.951956 |
Target: 5'- uGACGcCAUccAGGAGGGCGcCaCGGACAu -3' miRNA: 3'- -UUGC-GUAuuUUUUCCCGUuG-GCCUGU- -5' |
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20758 | 3' | -48.2 | NC_004688.1 | + | 49738 | 0.71 | 0.937342 |
Target: 5'- uGGCGCAaGAAGGaccccgucuGGcGGCGGCCGGAUg -3' miRNA: 3'- -UUGCGUaUUUUU---------UC-CCGUUGGCCUGu -5' |
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20758 | 3' | -48.2 | NC_004688.1 | + | 109657 | 0.78 | 0.636448 |
Target: 5'- gAGgGCAgu----AGGGCAACCGGGCAg -3' miRNA: 3'- -UUgCGUauuuuuUCCCGUUGGCCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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