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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
20758 | 5' | -52.3 | NC_004688.1 | + | 8999 | 0.68 | 0.900922 |
Target: 5'- --cGCCCUugUGCagggacaCCUCAGugaUCGUg -3' miRNA: 3'- caaCGGGAugACG-------GGAGUCuuaAGCA- -5' |
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20758 | 5' | -52.3 | NC_004688.1 | + | 26662 | 0.67 | 0.908202 |
Target: 5'- --cGCCCUGCUGCUguugcuugUCAGcAUUCGg -3' miRNA: 3'- caaCGGGAUGACGGg-------AGUCuUAAGCa -5' |
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20758 | 5' | -52.3 | NC_004688.1 | + | 38595 | 0.68 | 0.872592 |
Target: 5'- --aGCCCgaaGC-GCCCUCGGGuaccgGUUCGUc -3' miRNA: 3'- caaCGGGa--UGaCGGGAGUCU-----UAAGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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