miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2076 3' -56.6 NC_001348.1 + 105901 0.66 0.876882
Target:  5'- cCGCGCGgguacACACGGUGuaugcgacguuCCCaCCGCgGCACa -3'
miRNA:   3'- -GUGUGC-----UGUGCUAU-----------GGG-GGCG-CGUGg -5'
2076 3' -56.6 NC_001348.1 + 59838 0.66 0.876882
Target:  5'- aCACACG-C-CGGUACaauuaCCCCGCGacgguaCACCc -3'
miRNA:   3'- -GUGUGCuGuGCUAUG-----GGGGCGC------GUGG- -5'
2076 3' -56.6 NC_001348.1 + 120203 0.66 0.86962
Target:  5'- uCAgGCGGCACGAaGCCCgCGauaACCc -3'
miRNA:   3'- -GUgUGCUGUGCUaUGGGgGCgcgUGG- -5'
2076 3' -56.6 NC_001348.1 + 109589 0.66 0.86962
Target:  5'- uCAgGCGGCACGAaGCCCgCGauaACCc -3'
miRNA:   3'- -GUgUGCUGUGCUaUGGGgGCgcgUGG- -5'
2076 3' -56.6 NC_001348.1 + 75200 0.66 0.862147
Target:  5'- aCACACaGAgGCu-UGCCCUCGUGCAauuCCu -3'
miRNA:   3'- -GUGUG-CUgUGcuAUGGGGGCGCGU---GG- -5'
2076 3' -56.6 NC_001348.1 + 124553 0.66 0.859864
Target:  5'- cCAC-CGACACGAUGCucaCCCCaaaggaugaccccgGUGCGuCCc -3'
miRNA:   3'- -GUGuGCUGUGCUAUG---GGGG--------------CGCGU-GG- -5'
2076 3' -56.6 NC_001348.1 + 105239 0.66 0.859864
Target:  5'- cCAC-CGACACGAUGCucaCCCCaaaggaugaccccgGUGCGuCCc -3'
miRNA:   3'- -GUGuGCUGUGCUAUG---GGGG--------------CGCGU-GG- -5'
2076 3' -56.6 NC_001348.1 + 39712 0.68 0.785508
Target:  5'- cCACA-GACgccucccccauaaACGcgGCCaCCCGCGCGCg -3'
miRNA:   3'- -GUGUgCUG-------------UGCuaUGG-GGGCGCGUGg -5'
2076 3' -56.6 NC_001348.1 + 52045 0.68 0.767867
Target:  5'- cCACACGA-GCGGUauugACCCCagaGCGUuuaGCCu -3'
miRNA:   3'- -GUGUGCUgUGCUA----UGGGGg--CGCG---UGG- -5'
2076 3' -56.6 NC_001348.1 + 123895 0.68 0.758403
Target:  5'- gAgGCGGCAC-AUAgCCaCCGCGCAgCa -3'
miRNA:   3'- gUgUGCUGUGcUAUgGG-GGCGCGUgG- -5'
2076 3' -56.6 NC_001348.1 + 105897 0.68 0.758403
Target:  5'- gAgGCGGCAC-AUAgCCaCCGCGCAgCa -3'
miRNA:   3'- gUgUGCUGUGcUAUgGG-GGCGCGUgG- -5'
2076 3' -56.6 NC_001348.1 + 48206 0.69 0.719532
Target:  5'- aACAUGGCA-GAaAUCCCUGCGCAacuCCa -3'
miRNA:   3'- gUGUGCUGUgCUaUGGGGGCGCGU---GG- -5'
2076 3' -56.6 NC_001348.1 + 93465 0.69 0.709605
Target:  5'- gUAUACgGugGgGGUGCCUCCGCGC-CUg -3'
miRNA:   3'- -GUGUG-CugUgCUAUGGGGGCGCGuGG- -5'
2076 3' -56.6 NC_001348.1 + 107234 0.7 0.669334
Target:  5'- --gGCGGCGCGGauCUCCCGCGguCACCc -3'
miRNA:   3'- gugUGCUGUGCUauGGGGGCGC--GUGG- -5'
2076 3' -56.6 NC_001348.1 + 122558 0.7 0.669334
Target:  5'- --gGCGGCGCGGauCUCCCGCGguCACCc -3'
miRNA:   3'- gugUGCUGUGCUauGGGGGCGC--GUGG- -5'
2076 3' -56.6 NC_001348.1 + 47717 0.7 0.659169
Target:  5'- aCACACGACGCcu--CCgCCGCaGCACg -3'
miRNA:   3'- -GUGUGCUGUGcuauGGgGGCG-CGUGg -5'
2076 3' -56.6 NC_001348.1 + 110588 0.71 0.577745
Target:  5'- gAUACGuCGCGggGCCCCgGCGCGu- -3'
miRNA:   3'- gUGUGCuGUGCuaUGGGGgCGCGUgg -5'
2076 3' -56.6 NC_001348.1 + 119204 0.71 0.577745
Target:  5'- gAUACGuCGCGggGCCCCgGCGCGu- -3'
miRNA:   3'- gUGUGCuGUGCuaUGGGGgCGCGUgg -5'
2076 3' -56.6 NC_001348.1 + 69806 0.72 0.567666
Target:  5'- uCGCGCGuaACAUc-UACCCCCGC-CACCa -3'
miRNA:   3'- -GUGUGC--UGUGcuAUGGGGGCGcGUGG- -5'
2076 3' -56.6 NC_001348.1 + 41890 0.72 0.557633
Target:  5'- gACACGGCAgcCGAUGCCCCCcaaaCG-ACCu -3'
miRNA:   3'- gUGUGCUGU--GCUAUGGGGGc---GCgUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.