Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2076 | 5' | -52.1 | NC_001348.1 | + | 107097 | 0.66 | 0.983313 |
Target: 5'- aGAuccGCGcCGCCGGACuGGaGCccgUUGCCu -3' miRNA: 3'- aCU---UGCuGCGGCUUG-CCaUGa--AGCGG- -5' |
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2076 | 5' | -52.1 | NC_001348.1 | + | 124170 | 0.66 | 0.973786 |
Target: 5'- aGGGCGugGCggcaaaacacccuCGcccagGugGGUACgUCGCCg -3' miRNA: 3'- aCUUGCugCG-------------GC-----UugCCAUGaAGCGG- -5' |
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2076 | 5' | -52.1 | NC_001348.1 | + | 60978 | 0.66 | 0.974057 |
Target: 5'- aUGAACGcauuggcCGCCGAACGGgguauugACUU-GCa -3' miRNA: 3'- -ACUUGCu------GCGGCUUGCCa------UGAAgCGg -5' |
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2076 | 5' | -52.1 | NC_001348.1 | + | 122695 | 0.66 | 0.983313 |
Target: 5'- aGAuccGCGcCGCCGGACuGGaGCccgUUGCCu -3' miRNA: 3'- aCU---UGCuGCGGCUUG-CCaUGa--AGCGG- -5' |
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2076 | 5' | -52.1 | NC_001348.1 | + | 105622 | 0.66 | 0.973786 |
Target: 5'- aGGGCGugGCggcaaaacacccuCGcccagGugGGUACgUCGCCg -3' miRNA: 3'- aCUUGCugCG-------------GC-----UugCCAUGaAGCGG- -5' |
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2076 | 5' | -52.1 | NC_001348.1 | + | 111416 | 0.67 | 0.964665 |
Target: 5'- gGGGCGGuauaucaUGCCGGcGCGGgGCUUCGUg -3' miRNA: 3'- aCUUGCU-------GCGGCU-UGCCaUGAAGCGg -5' |
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2076 | 5' | -52.1 | NC_001348.1 | + | 109427 | 0.67 | 0.971252 |
Target: 5'- gGAAauaGACaCCGGGC-GUACaUCGCCa -3' miRNA: 3'- aCUUg--CUGcGGCUUGcCAUGaAGCGG- -5' |
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2076 | 5' | -52.1 | NC_001348.1 | + | 120365 | 0.67 | 0.971252 |
Target: 5'- gGAAauaGACaCCGGGC-GUACaUCGCCa -3' miRNA: 3'- aCUUg--CUGcGGCUUGcCAUGaAGCGG- -5' |
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2076 | 5' | -52.1 | NC_001348.1 | + | 118376 | 0.67 | 0.964665 |
Target: 5'- gGGGCGGuauaucaUGCCGGcGCGGgGCUUCGUg -3' miRNA: 3'- aCUUGCU-------GCGGCU-UGCCaUGAAGCGg -5' |
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2076 | 5' | -52.1 | NC_001348.1 | + | 16970 | 0.67 | 0.957853 |
Target: 5'- -uGugGACGCC--AgGGUAUgUCGCCa -3' miRNA: 3'- acUugCUGCGGcuUgCCAUGaAGCGG- -5' |
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2076 | 5' | -52.1 | NC_001348.1 | + | 42996 | 0.68 | 0.949765 |
Target: 5'- --uACGAuaCGCCGAACGGccaugUUUGCCg -3' miRNA: 3'- acuUGCU--GCGGCUUGCCaug--AAGCGG- -5' |
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2076 | 5' | -52.1 | NC_001348.1 | + | 120069 | 0.69 | 0.925247 |
Target: 5'- gGGGCGcgguacccCGCCGAuggggagggggcGCGGUACccCGCCg -3' miRNA: 3'- aCUUGCu-------GCGGCU------------UGCCAUGaaGCGG- -5' |
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2076 | 5' | -52.1 | NC_001348.1 | + | 109669 | 0.69 | 0.925247 |
Target: 5'- gGGGCGcgguacccCGCCGAuggggagggggcGCGGUACccCGCCg -3' miRNA: 3'- aCUUGCu-------GCGGCU------------UGCCAUGaaGCGG- -5' |
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2076 | 5' | -52.1 | NC_001348.1 | + | 110958 | 0.69 | 0.919593 |
Target: 5'- cGAuaGCGACGauGAugGGU-CUaCGCCa -3' miRNA: 3'- aCU--UGCUGCggCUugCCAuGAaGCGG- -5' |
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2076 | 5' | -52.1 | NC_001348.1 | + | 109750 | 0.69 | 0.919593 |
Target: 5'- gGGGCGcgguacccCGCCGAuggggagggggGCGGUACccCGCCg -3' miRNA: 3'- aCUUGCu-------GCGGCU-----------UGCCAUGaaGCGG- -5' |
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2076 | 5' | -52.1 | NC_001348.1 | + | 118834 | 0.69 | 0.919593 |
Target: 5'- cGAuaGCGACGauGAugGGU-CUaCGCCa -3' miRNA: 3'- aCU--UGCUGCggCUugCCAuGAaGCGG- -5' |
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2076 | 5' | -52.1 | NC_001348.1 | + | 120123 | 0.69 | 0.925247 |
Target: 5'- gGGGCGcgguacccCGCCGAuggggagggggcGCGGUACccCGCCg -3' miRNA: 3'- aCUUGCu-------GCGGCU------------UGCCAUGaaGCGG- -5' |
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2076 | 5' | -52.1 | NC_001348.1 | + | 123196 | 0.76 | 0.584207 |
Target: 5'- ----gGACGCCGAGCGGcgAUUUcCGCCa -3' miRNA: 3'- acuugCUGCGGCUUGCCa-UGAA-GCGG- -5' |
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2076 | 5' | -52.1 | NC_001348.1 | + | 106596 | 0.76 | 0.584207 |
Target: 5'- ----gGACGCCGAGCGGcgAUUUcCGCCa -3' miRNA: 3'- acuugCUGCGGCUUGCCa-UGAA-GCGG- -5' |
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2076 | 5' | -52.1 | NC_001348.1 | + | 2071 | 0.8 | 0.408586 |
Target: 5'- cUGAguuGCGGCGCUGAAgGGUGCaUCGCa -3' miRNA: 3'- -ACU---UGCUGCGGCUUgCCAUGaAGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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