miRNA: 3'- ugUGG--GCCGCUCCAGGUGcUGACuGC- -5'
miRNA: 3'- uGUGGGCCGc---UCCAGGUGC------UGACugC- -5'
miRNA: 3'- -UGUGGGCCGc--UCCaGGUGC-------------UGACUGC- -5'
miRNA: 3'- uGUGGGCCGCucCAGGUGCUG--ACUGC- -5'
miRNA: 3'- -UGUGGGCCGCUCCAGGUGCUGACUGC- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 20764 | 3' | -59 | NC_004689.1 | + | 11083 | 0.66 | 0.611381 |
|
Target: 5'- -aGCCgcUGGCGGGGUCUGCuGCUG-CGg -3' miRNA: 3'- ugUGG--GCCGCUCCAGGUGcUGACuGC- -5' |
|||||||
| 20764 | 3' | -59 | NC_004689.1 | + | 66195 | 0.67 | 0.569816 |
|
Target: 5'- gUACCCGGUagcuGGGUUCGCGuggcucACUGugGg -3' miRNA: 3'- uGUGGGCCGc---UCCAGGUGC------UGACugC- -5' |
|||||||
| 20764 | 3' | -59 | NC_004689.1 | + | 35600 | 0.68 | 0.459478 |
|
Target: 5'- aGCACCCGGCccaGGG-CUGCGaaggaucagcaccGCUGGCGg -3' miRNA: 3'- -UGUGGGCCGc--UCCaGGUGC-------------UGACUGC- -5' |
|||||||
| 20764 | 3' | -59 | NC_004689.1 | + | 56297 | 0.73 | 0.236988 |
|
Target: 5'- gUACCCGGUGuuGUUCGCGACacUGGCGa -3' miRNA: 3'- uGUGGGCCGCucCAGGUGCUG--ACUGC- -5' |
|||||||
| 20764 | 3' | -59 | NC_004689.1 | + | 8146 | 1.08 | 0.000866 |
|
Target: 5'- gACACCCGGCGAGGUCCACGACUGACGu -3' miRNA: 3'- -UGUGGGCCGCUCCAGGUGCUGACUGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home