miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20767 5' -54.2 NC_004689.1 + 21696 0.66 0.807337
Target:  5'- cGGUGCCCcaGGCUGCAcaggGAcCGUGGCAg -3'
miRNA:   3'- -UCGUGGG--UUGACGUa---CUaGCGUCGUg -5'
20767 5' -54.2 NC_004689.1 + 18249 0.66 0.787783
Target:  5'- uAGCGCCCGAuCUGCc--AUCuuGGCACc -3'
miRNA:   3'- -UCGUGGGUU-GACGuacUAGcgUCGUG- -5'
20767 5' -54.2 NC_004689.1 + 7212 0.66 0.777752
Target:  5'- gAGCAgaagCCAACUGCGccuuacgcaaUGcugCGCGGCGCu -3'
miRNA:   3'- -UCGUg---GGUUGACGU----------ACua-GCGUCGUG- -5'
20767 5' -54.2 NC_004689.1 + 18670 0.66 0.777752
Target:  5'- uGCGCCgguugccgguCAACUGguUGAcCGCuGCGCc -3'
miRNA:   3'- uCGUGG----------GUUGACguACUaGCGuCGUG- -5'
20767 5' -54.2 NC_004689.1 + 275 0.66 0.75724
Target:  5'- cGGCACCau-UUGUcgGAUCGgAGCGg -3'
miRNA:   3'- -UCGUGGguuGACGuaCUAGCgUCGUg -5'
20767 5' -54.2 NC_004689.1 + 35046 0.67 0.746782
Target:  5'- uAGCucACCCAACcgccUGCAaccaucUGGUCGC-GCGCc -3'
miRNA:   3'- -UCG--UGGGUUG----ACGU------ACUAGCGuCGUG- -5'
20767 5' -54.2 NC_004689.1 + 35601 0.68 0.669803
Target:  5'- aAGCACCCGgcccaggGCUGCGaagGAUCaGCAcCGCu -3'
miRNA:   3'- -UCGUGGGU-------UGACGUa--CUAG-CGUcGUG- -5'
20767 5' -54.2 NC_004689.1 + 23149 0.69 0.593166
Target:  5'- aAGcCAUUCGGCUGCGU--UCGCAGUGCu -3'
miRNA:   3'- -UC-GUGGGUUGACGUAcuAGCGUCGUG- -5'
20767 5' -54.2 NC_004689.1 + 39197 0.71 0.484495
Target:  5'- cGGUugCCGcugcACUGCAUcGGUCGCAucgauccGCACg -3'
miRNA:   3'- -UCGugGGU----UGACGUA-CUAGCGU-------CGUG- -5'
20767 5' -54.2 NC_004689.1 + 18940 0.71 0.465061
Target:  5'- uGCugCCAGCcGCGUGccauaagCGCAGUACc -3'
miRNA:   3'- uCGugGGUUGaCGUACua-----GCGUCGUG- -5'
20767 5' -54.2 NC_004689.1 + 64526 0.73 0.361443
Target:  5'- uGCACUCAugU-CAUGG-CGCAGCACu -3'
miRNA:   3'- uCGUGGGUugAcGUACUaGCGUCGUG- -5'
20767 5' -54.2 NC_004689.1 + 7877 0.74 0.327956
Target:  5'- cGCGCagagaCCAACUGCGccuuUCGCAGCGCa -3'
miRNA:   3'- uCGUG-----GGUUGACGUacu-AGCGUCGUG- -5'
20767 5' -54.2 NC_004689.1 + 59094 0.75 0.289404
Target:  5'- cGCACCUGAUcGCAgUGAcCGCAGCACu -3'
miRNA:   3'- uCGUGGGUUGaCGU-ACUaGCGUCGUG- -5'
20767 5' -54.2 NC_004689.1 + 13032 1.09 0.001347
Target:  5'- gAGCACCCAACUGCAUGAUCGCAGCACc -3'
miRNA:   3'- -UCGUGGGUUGACGUACUAGCGUCGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.