miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20769 5' -52.7 NC_004689.1 + 52147 0.66 0.8785
Target:  5'- uGUAGCCGUA-GGAGGUcauCAG-CGAAAc -3'
miRNA:   3'- -CGUCGGCAUgCCUUCAc--GUCaGCUUU- -5'
20769 5' -52.7 NC_004689.1 + 47251 0.66 0.876166
Target:  5'- uGUAGUCGU-CGGggGUcugacucggcggggGCAGUCGc-- -3'
miRNA:   3'- -CGUCGGCAuGCCuuCA--------------CGUCAGCuuu -5'
20769 5' -52.7 NC_004689.1 + 57346 0.7 0.639582
Target:  5'- gGCAGCCGUACGGAuc-GCAc-CGAAu -3'
miRNA:   3'- -CGUCGGCAUGCCUucaCGUcaGCUUu -5'
20769 5' -52.7 NC_004689.1 + 16381 1.08 0.002645
Target:  5'- uGCAGCCGUACGGAAGUGCAGUCGAAAc -3'
miRNA:   3'- -CGUCGGCAUGCCUUCACGUCAGCUUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.