miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2077 5' -49.8 NC_001348.1 + 107945 1.07 0.011986
Target:  5'- aCGACGAGGAAGAGGAUGAAGACGAAAc -3'
miRNA:   3'- -GCUGCUCCUUCUCCUACUUCUGCUUU- -5'
2077 5' -49.8 NC_001348.1 + 121847 1.07 0.011986
Target:  5'- aCGACGAGGAAGAGGAUGAAGACGAAAc -3'
miRNA:   3'- -GCUGCUCCUUCUCCUACUUCUGCUUU- -5'
2077 5' -49.8 NC_001348.1 + 13935 0.9 0.141028
Target:  5'- aCGACGAGGGAGAGGcgGAGGAgGGAGa -3'
miRNA:   3'- -GCUGCUCCUUCUCCuaCUUCUgCUUU- -5'
2077 5' -49.8 NC_001348.1 + 13982 0.9 0.141028
Target:  5'- aCGACGAGGGAGAGGcgGAGGAgGGAGa -3'
miRNA:   3'- -GCUGCUCCUUCUCCuaCUUCUgCUUU- -5'
2077 5' -49.8 NC_001348.1 + 14030 0.9 0.141028
Target:  5'- aCGACGAGGGAGAGGcgGAGGAgGGAGa -3'
miRNA:   3'- -GCUGCUCCUUCUCCuaCUUCUgCUUU- -5'
2077 5' -49.8 NC_001348.1 + 14078 0.9 0.141028
Target:  5'- aCGACGAGGGAGAGGcgGAGGAgGGAGa -3'
miRNA:   3'- -GCUGCUCCUUCUCCuaCUUCUgCUUU- -5'
2077 5' -49.8 NC_001348.1 + 14204 0.88 0.184632
Target:  5'- aCGACGAGGGAGAGGcgGAGGAgGAu- -3'
miRNA:   3'- -GCUGCUCCUUCUCCuaCUUCUgCUuu -5'
2077 5' -49.8 NC_001348.1 + 14156 0.88 0.189594
Target:  5'- aCGACGAGGGAGAGGcgGAGGAgGAc- -3'
miRNA:   3'- -GCUGCUCCUUCUCCuaCUUCUgCUuu -5'
2077 5' -49.8 NC_001348.1 + 48802 0.83 0.35542
Target:  5'- uGuuGAGGAAGAgauGGAUGAAGACGAGAg -3'
miRNA:   3'- gCugCUCCUUCU---CCUACUUCUGCUUU- -5'
2077 5' -49.8 NC_001348.1 + 124360 0.81 0.435904
Target:  5'- -aGCGAGGAGGGGGgcGggGACGAc- -3'
miRNA:   3'- gcUGCUCCUUCUCCuaCuuCUGCUuu -5'
2077 5' -49.8 NC_001348.1 + 105432 0.81 0.435904
Target:  5'- -aGCGAGGAGGGGGgcGggGACGAc- -3'
miRNA:   3'- gcUGCUCCUUCUCCuaCuuCUGCUuu -5'
2077 5' -49.8 NC_001348.1 + 14109 0.8 0.464979
Target:  5'- gGAgGAGGGAGAGGcgGAGGAgGGAGa -3'
miRNA:   3'- gCUgCUCCUUCUCCuaCUUCUgCUUU- -5'
2077 5' -49.8 NC_001348.1 + 108072 0.78 0.589661
Target:  5'- uCGugG-GGAucgucaucGGAGGAUGAAGACGAu- -3'
miRNA:   3'- -GCugCuCCU--------UCUCCUACUUCUGCUuu -5'
2077 5' -49.8 NC_001348.1 + 121720 0.78 0.589661
Target:  5'- uCGugG-GGAucgucaucGGAGGAUGAAGACGAu- -3'
miRNA:   3'- -GCugCuCCU--------UCUCCUACUUCUGCUuu -5'
2077 5' -49.8 NC_001348.1 + 109739 0.73 0.847854
Target:  5'- cCGAUGGGGAGGGGGcgcgguaccccgccgAUGggGAgGggGg -3'
miRNA:   3'- -GCUGCUCCUUCUCC---------------UACuuCUgCuuU- -5'
2077 5' -49.8 NC_001348.1 + 109658 0.72 0.872157
Target:  5'- cCGAUGGGGAGGGGGcgcgguaccccgccgAUGggGAgGggGc -3'
miRNA:   3'- -GCUGCUCCUUCUCC---------------UACuuCUgCuuU- -5'
2077 5' -49.8 NC_001348.1 + 120134 0.72 0.872157
Target:  5'- cCGAUGGGGAGGGGGcgcgguaccccgccgAUGggGAgGggGc -3'
miRNA:   3'- -GCUGCUCCUUCUCC---------------UACuuCUgCuuU- -5'
2077 5' -49.8 NC_001348.1 + 120080 0.72 0.872157
Target:  5'- cCGAUGGGGAGGGGGcgcgguaccccgccgAUGggGAgGggGc -3'
miRNA:   3'- -GCUGCUCCUUCUCC---------------UACuuCUgCuuU- -5'
2077 5' -49.8 NC_001348.1 + 102609 0.7 0.949298
Target:  5'- uGGCGGGGGu---GGUGAAGGCGAGGg -3'
miRNA:   3'- gCUGCUCCUucucCUACUUCUGCUUU- -5'
2077 5' -49.8 NC_001348.1 + 13459 0.7 0.949298
Target:  5'- cCGGC-AGGAucucGGAUGggGACGGAGg -3'
miRNA:   3'- -GCUGcUCCUucu-CCUACuuCUGCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.