miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20770 3' -57.1 NC_004689.1 + 63439 0.66 0.694646
Target:  5'- cCGC-CUUGA-GGCGU-GCCACCGGg- -3'
miRNA:   3'- -GCGcGAGCUaCUGUAgCGGUGGCCac -5'
20770 3' -57.1 NC_004689.1 + 28362 0.66 0.673614
Target:  5'- uGcCGUcaUCGAacuUGAUcgUGCCGCUGGUGg -3'
miRNA:   3'- gC-GCG--AGCU---ACUGuaGCGGUGGCCAC- -5'
20770 3' -57.1 NC_004689.1 + 41793 0.67 0.652437
Target:  5'- aCGCGUUCGucucGACAcgCGCUugcaGCCGGUu -3'
miRNA:   3'- -GCGCGAGCua--CUGUa-GCGG----UGGCCAc -5'
20770 3' -57.1 NC_004689.1 + 23137 0.67 0.63119
Target:  5'- uGCGUUCGcaGUGcuCAUCgaacgGCCACCGGUc -3'
miRNA:   3'- gCGCGAGC--UACu-GUAG-----CGGUGGCCAc -5'
20770 3' -57.1 NC_004689.1 + 52550 0.69 0.545855
Target:  5'- aCGaGUUCGAUGGCGUUGUCGucgcuguccccuuCCGGUGc -3'
miRNA:   3'- -GCgCGAGCUACUGUAGCGGU-------------GGCCAC- -5'
20770 3' -57.1 NC_004689.1 + 5285 0.69 0.543784
Target:  5'- aGUGCcccaagacgaauucUgCGGUGGCuuguuUCGCCACCGGUa -3'
miRNA:   3'- gCGCG--------------A-GCUACUGu----AGCGGUGGCCAc -5'
20770 3' -57.1 NC_004689.1 + 43514 0.69 0.506002
Target:  5'- uGCGgUCGAUGACccaGCCGCCGu-- -3'
miRNA:   3'- gCGCgAGCUACUGuagCGGUGGCcac -5'
20770 3' -57.1 NC_004689.1 + 51492 0.69 0.495979
Target:  5'- uGCGCUUccgGugGUUGCCACCcuucGGUGg -3'
miRNA:   3'- gCGCGAGcuaCugUAGCGGUGG----CCAC- -5'
20770 3' -57.1 NC_004689.1 + 10899 0.7 0.456845
Target:  5'- aCGCG-UCGuUGGCGUCguGCCACUGGUa -3'
miRNA:   3'- -GCGCgAGCuACUGUAG--CGGUGGCCAc -5'
20770 3' -57.1 NC_004689.1 + 41446 0.72 0.358651
Target:  5'- aGCGuCUCGGUGAacaCGUCgGCCuGCUGGUGg -3'
miRNA:   3'- gCGC-GAGCUACU---GUAG-CGG-UGGCCAC- -5'
20770 3' -57.1 NC_004689.1 + 41133 0.76 0.199108
Target:  5'- gCGCGCUCGucacaccGAguUCGCCACCGGc- -3'
miRNA:   3'- -GCGCGAGCua-----CUguAGCGGUGGCCac -5'
20770 3' -57.1 NC_004689.1 + 12003 0.77 0.174828
Target:  5'- gGCGguggCGGUGACAagaUCGCCACCGGUc -3'
miRNA:   3'- gCGCga--GCUACUGU---AGCGGUGGCCAc -5'
20770 3' -57.1 NC_004689.1 + 16625 1.09 0.001029
Target:  5'- cCGCGCUCGAUGACAUCGCCACCGGUGa -3'
miRNA:   3'- -GCGCGAGCUACUGUAGCGGUGGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.