miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20771 5' -51.8 NC_004689.1 + 52747 0.66 0.900134
Target:  5'- uGAUcUGcGCGACCUugaGCUUGCCgUCg -3'
miRNA:   3'- cUUGaACuUGCUGGA---CGAACGGgAGa -5'
20771 5' -51.8 NC_004689.1 + 42310 0.67 0.853168
Target:  5'- cGAACgUGAucguguccacgGCGACCUGCUcgggcacGCCCUg- -3'
miRNA:   3'- -CUUGaACU-----------UGCUGGACGAa------CGGGAga -5'
20771 5' -51.8 NC_004689.1 + 28046 0.69 0.791647
Target:  5'- cGACUUGAGCGACUUGUauguuccaucggcggUUGCCgaCg -3'
miRNA:   3'- cUUGAACUUGCUGGACG---------------AACGGgaGa -5'
20771 5' -51.8 NC_004689.1 + 17445 1.09 0.00263
Target:  5'- cGAACUUGAACGACCUGCUUGCCCUCUg -3'
miRNA:   3'- -CUUGAACUUGCUGGACGAACGGGAGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.