miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20774 5' -49.3 NC_004689.1 + 2845 0.66 0.979101
Target:  5'- uGCcCCGAau-GCGGG-UCGAAGACCu -3'
miRNA:   3'- -CGuGGCUcguUGUCCaAGCUUUUGGu -5'
20774 5' -49.3 NC_004689.1 + 51278 0.66 0.973692
Target:  5'- aCACCG-GCuGCuGGUUCGc-GGCCAa -3'
miRNA:   3'- cGUGGCuCGuUGuCCAAGCuuUUGGU- -5'
20774 5' -49.3 NC_004689.1 + 3760 0.67 0.968685
Target:  5'- cGCugCGAugguuucccaguccuGCGACGGGUU-GuAAACCAg -3'
miRNA:   3'- -CGugGCU---------------CGUUGUCCAAgCuUUUGGU- -5'
20774 5' -49.3 NC_004689.1 + 29665 0.67 0.959959
Target:  5'- uGCACCG-GCAcCAG---CGGGAGCCAg -3'
miRNA:   3'- -CGUGGCuCGUuGUCcaaGCUUUUGGU- -5'
20774 5' -49.3 NC_004689.1 + 12140 0.67 0.955871
Target:  5'- uCACCGAucuGCAcgACcGGUUCGAccgGAACCu -3'
miRNA:   3'- cGUGGCU---CGU--UGuCCAAGCU---UUUGGu -5'
20774 5' -49.3 NC_004689.1 + 6599 0.67 0.951509
Target:  5'- cCACCcaGAGCA--GGGUgauacCGAAGACCAg -3'
miRNA:   3'- cGUGG--CUCGUugUCCAa----GCUUUUGGU- -5'
20774 5' -49.3 NC_004689.1 + 25035 0.68 0.941942
Target:  5'- cGCGCCaguguGAGUGGCGGGUuggcgUUGuuGACCAc -3'
miRNA:   3'- -CGUGG-----CUCGUUGUCCA-----AGCuuUUGGU- -5'
20774 5' -49.3 NC_004689.1 + 40341 0.68 0.931227
Target:  5'- aCACCcGGCGucugACGGGUUCGGGcuaaucGACCGc -3'
miRNA:   3'- cGUGGcUCGU----UGUCCAAGCUU------UUGGU- -5'
20774 5' -49.3 NC_004689.1 + 6628 0.69 0.892144
Target:  5'- cGCACCGAGaacgAGCAGGaUC--AAACCGg -3'
miRNA:   3'- -CGUGGCUCg---UUGUCCaAGcuUUUGGU- -5'
20774 5' -49.3 NC_004689.1 + 27383 0.7 0.849355
Target:  5'- uGUACCGcuucugcgaugggcAGCAACAGGUcUCGGAuguCCGc -3'
miRNA:   3'- -CGUGGC--------------UCGUUGUCCA-AGCUUuu-GGU- -5'
20774 5' -49.3 NC_004689.1 + 45141 0.74 0.667074
Target:  5'- gGCAUCGAGCcuGACAGcg-UGAAAGCCAa -3'
miRNA:   3'- -CGUGGCUCG--UUGUCcaaGCUUUUGGU- -5'
20774 5' -49.3 NC_004689.1 + 19103 1.12 0.003654
Target:  5'- cGCACCGAGCAACAGGUUCGAAAACCAc -3'
miRNA:   3'- -CGUGGCUCGUUGUCCAAGCUUUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.