miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20775 3' -58.4 NC_004689.1 + 7374 0.66 0.588505
Target:  5'- aGUUGCGCGaauacgcGCCCcggCUGUGGUacauguccgaggcuUGGCg -3'
miRNA:   3'- aCAGCGCGUa------UGGGa--GACGCCG--------------ACCG- -5'
20775 3' -58.4 NC_004689.1 + 65643 0.66 0.570564
Target:  5'- -uUCGC-CGUACCagaUCgGCuGGCUGGUg -3'
miRNA:   3'- acAGCGcGUAUGGg--AGaCG-CCGACCG- -5'
20775 3' -58.4 NC_004689.1 + 48750 0.67 0.529973
Target:  5'- -aUCGCGCucgGCCUUCUGCuccGGCguguuguugaagucgGGCc -3'
miRNA:   3'- acAGCGCGua-UGGGAGACG---CCGa--------------CCG- -5'
20775 3' -58.4 NC_004689.1 + 1850 0.67 0.528945
Target:  5'- uUGgCGCGCugAUCCgaugCUGCGGCcucGGCu -3'
miRNA:   3'- -ACaGCGCGuaUGGGa---GACGCCGa--CCG- -5'
20775 3' -58.4 NC_004689.1 + 224 0.7 0.394543
Target:  5'- cGUCGUGCuUAUCCgacgcuUCUGCGaaUGGCa -3'
miRNA:   3'- aCAGCGCGuAUGGG------AGACGCcgACCG- -5'
20775 3' -58.4 NC_004689.1 + 31893 0.7 0.389284
Target:  5'- aUGUCGaUGCcaccggggcccacuUGCCCUgUGCGGCUccGGCc -3'
miRNA:   3'- -ACAGC-GCGu-------------AUGGGAgACGCCGA--CCG- -5'
20775 3' -58.4 NC_004689.1 + 63247 0.7 0.377195
Target:  5'- aG-CGCGCuacUGCCCUCguccUGUGGCgGGUa -3'
miRNA:   3'- aCaGCGCGu--AUGGGAG----ACGCCGaCCG- -5'
20775 3' -58.4 NC_004689.1 + 64887 0.72 0.277406
Target:  5'- cGUCaCGCAU-CCCUCUGCGGUgaccugucccuUGcGCa -3'
miRNA:   3'- aCAGcGCGUAuGGGAGACGCCG-----------AC-CG- -5'
20775 3' -58.4 NC_004689.1 + 19597 1.11 0.000439
Target:  5'- aUGUCGCGCAUACCCUCUGCGGCUGGCu -3'
miRNA:   3'- -ACAGCGCGUAUGGGAGACGCCGACCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.