miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20775 5' -54.5 NC_004689.1 + 23562 0.66 0.796106
Target:  5'- uUCGCUCGGCCUGccgGAGUGucauucacacUCUGC-Cg -3'
miRNA:   3'- -AGCGAGUCGGGUua-CUCGU----------AGACGcG- -5'
20775 5' -54.5 NC_004689.1 + 25659 0.73 0.418681
Target:  5'- aUCGUauccgUAGCCgGG-GAGCAUCUGCGUu -3'
miRNA:   3'- -AGCGa----GUCGGgUUaCUCGUAGACGCG- -5'
20775 5' -54.5 NC_004689.1 + 44916 0.72 0.447508
Target:  5'- cCGUUCGGCC--AUGAGCuuGUCUGUGUc -3'
miRNA:   3'- aGCGAGUCGGguUACUCG--UAGACGCG- -5'
20775 5' -54.5 NC_004689.1 + 48777 0.7 0.549548
Target:  5'- cUGCUCGGCCUugcGUGccuugcgGGCAUC-GCGCu -3'
miRNA:   3'- aGCGAGUCGGGu--UAC-------UCGUAGaCGCG- -5'
20775 5' -54.5 NC_004689.1 + 37146 0.69 0.604955
Target:  5'- -aGCUCAGUCCAGc--GCcgGUCUGCGUc -3'
miRNA:   3'- agCGAGUCGGGUUacuCG--UAGACGCG- -5'
20775 5' -54.5 NC_004689.1 + 25752 0.69 0.604955
Target:  5'- aUCGCgugcCAGCCCcAUGAgaacgucuccgGCGUCUG-GCa -3'
miRNA:   3'- -AGCGa---GUCGGGuUACU-----------CGUAGACgCG- -5'
20775 5' -54.5 NC_004689.1 + 33878 0.68 0.670799
Target:  5'- aUCGUUCAGCCgCGuuucguucGGCAUUaGCGCa -3'
miRNA:   3'- -AGCGAGUCGG-GUuac-----UCGUAGaCGCG- -5'
20775 5' -54.5 NC_004689.1 + 19386 0.68 0.691483
Target:  5'- aUUGCUCAGCgCCAcccUGAGCGaagguggucaucaUCUGuUGCu -3'
miRNA:   3'- -AGCGAGUCG-GGUu--ACUCGU-------------AGAC-GCG- -5'
20775 5' -54.5 NC_004689.1 + 38933 0.68 0.703368
Target:  5'- aUGC-CAGCCgCucUGAuacGCGUCUGCGUu -3'
miRNA:   3'- aGCGaGUCGG-GuuACU---CGUAGACGCG- -5'
20775 5' -54.5 NC_004689.1 + 46332 0.67 0.724754
Target:  5'- gCGUUCGG-CgAAUGAGgAUCggGCGCa -3'
miRNA:   3'- aGCGAGUCgGgUUACUCgUAGa-CGCG- -5'
20775 5' -54.5 NC_004689.1 + 51127 0.67 0.735314
Target:  5'- gUCGaa-AGCCaccucguugUAAUGcGCGUCUGCGCa -3'
miRNA:   3'- -AGCgagUCGG---------GUUACuCGUAGACGCG- -5'
20775 5' -54.5 NC_004689.1 + 36180 0.67 0.756113
Target:  5'- aCGCgCAGCCCu---AGCc-CUGCGCa -3'
miRNA:   3'- aGCGaGUCGGGuuacUCGuaGACGCG- -5'
20775 5' -54.5 NC_004689.1 + 12299 0.66 0.776407
Target:  5'- aUCGcCUCGaCCUGAcGAGCGUCgGCGUc -3'
miRNA:   3'- -AGC-GAGUcGGGUUaCUCGUAGaCGCG- -5'
20775 5' -54.5 NC_004689.1 + 58918 0.66 0.786337
Target:  5'- cUGCUCAGCgaCCGAUG-GCAgaUGCGa -3'
miRNA:   3'- aGCGAGUCG--GGUUACuCGUagACGCg -5'
20775 5' -54.5 NC_004689.1 + 20764 0.66 0.795137
Target:  5'- cUCGCUCGaaacGCCCAGacggucgaacgcUGccuuugcuuucucAGCGUCUuGCGCc -3'
miRNA:   3'- -AGCGAGU----CGGGUU------------AC-------------UCGUAGA-CGCG- -5'
20775 5' -54.5 NC_004689.1 + 19562 1.13 0.000758
Target:  5'- cUCGCUCAGCCCAAUGAGCAUCUGCGCg -3'
miRNA:   3'- -AGCGAGUCGGGUUACUCGUAGACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.