Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
20776 | 3' | -51.5 | NC_004689.1 | + | 21670 | 0.69 | 0.833627 |
Target: 5'- uGGCAGG-CGGUGcCGGAGGUCc--- -3' miRNA: 3'- uCUGUCCaGCCACuGCUUUCAGucac -5' |
|||||||
20776 | 3' | -51.5 | NC_004689.1 | + | 13881 | 0.75 | 0.464546 |
Target: 5'- gAGACGGGUCGcccucGGCGAAAucGUCGGUGa -3' miRNA: 3'- -UCUGUCCAGCca---CUGCUUU--CAGUCAC- -5' |
|||||||
20776 | 3' | -51.5 | NC_004689.1 | + | 20015 | 1.08 | 0.003828 |
Target: 5'- gAGACAGGUCGGUGACGAAAGUCAGUGc -3' miRNA: 3'- -UCUGUCCAGCCACUGCUUUCAGUCAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home