miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
20777 5' -51.8 NC_004689.1 + 51530 0.66 0.924633
Target:  5'- cUGUGCgauUGCAGAcgGUCUacUGuGCGGUAGCc -3'
miRNA:   3'- -ACACG---ACGUUU--UAGA--GC-CGCCGUUGc -5'
20777 5' -51.8 NC_004689.1 + 13763 0.66 0.918566
Target:  5'- --cGCUGCGGc--CUCGG-GGUGACGg -3'
miRNA:   3'- acaCGACGUUuuaGAGCCgCCGUUGC- -5'
20777 5' -51.8 NC_004689.1 + 3985 0.66 0.905581
Target:  5'- cGUGCUGacgaAAGAUCgucuccaauguUCGGCuugcuucuggGGCAGCa -3'
miRNA:   3'- aCACGACg---UUUUAG-----------AGCCG----------CCGUUGc -5'
20777 5' -51.8 NC_004689.1 + 20874 0.66 0.898667
Target:  5'- aUGcGCUGCAA---UUCGGCaGCGGCu -3'
miRNA:   3'- -ACaCGACGUUuuaGAGCCGcCGUUGc -5'
20777 5' -51.8 NC_004689.1 + 22889 0.67 0.868296
Target:  5'- -uUGCUugaGCAAu-UCuUCGGCGGCuGCGa -3'
miRNA:   3'- acACGA---CGUUuuAG-AGCCGCCGuUGC- -5'
20777 5' -51.8 NC_004689.1 + 46352 0.68 0.815329
Target:  5'- -uUGcCUGCGAAG-CUCGGCGuGCGuucgGCGa -3'
miRNA:   3'- acAC-GACGUUUUaGAGCCGC-CGU----UGC- -5'
20777 5' -51.8 NC_004689.1 + 33695 0.69 0.795979
Target:  5'- --aGCUGCAcAAgcugaUCGGCuccGGCAGCGg -3'
miRNA:   3'- acaCGACGUuUUag---AGCCG---CCGUUGC- -5'
20777 5' -51.8 NC_004689.1 + 20076 1.09 0.002761
Target:  5'- aUGUGCUGCAAAAUCUCGGCGGCAACGc -3'
miRNA:   3'- -ACACGACGUUUUAGAGCCGCCGUUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.